XLOC_003804


Basic Information

Item Value
gene id XLOC_003804
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 931493 ~ 985740 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008728
CTCTTTAGCATGAGCTGTATGAGCTAACCACTAAACTTACCTATACCTTTATTTTAAGAAGAACAAACTTGGTGGAGTGCTGAGGATCACTGTCAACATCTGGATCGTATTAAAAACATCCATCAGAGTCAGCTTtagctagaaacaagacaaaaaGCAAGGTCTAACATCAGATCGGGGCCGATTCCAGCGCTGTAGGCCACGGCGCGTCCCAGCTGAGGATCACACACTCTGGACATCTGACAACACTTCACAGGCCGAGGTCACAAGCCAAGCCTGCTGCTTTTATTCAGCCCAGCTGGCTCTCATTTTACGCCTTCAGCCGTGTTTGTGACTCCAAGTGGCCTGTGTTTTCACTGCTGGAGTCTGCCACCGTCTGCAGCCGGAGGGTGTCTGCAGATCATGACCACAGCATGTGCGATAGGCCGGCGGAGGGTTTCAGGAAGCTGCTGATAATTTTAGATTCCCCAGAAAAGCTCATAGCAAAGACAGAGTGGAGCGGACAGGCATGAATGGAGGAGGAACAGCTCTAAAATAATGACCTCAGCTTCTCTCAGACACGGCCCTCCGTCCACTGCTGTAAAACAACACAGTACAAACACTCACATCACTGTAATTAAGtCTGCAGTGATTGGCTGAGAGGGATAATCATTCCATTCCGTCCAGTCAAATCACACAGAAAAATCCCATCAGACTGACCTCAAGACATAAACGCTTTATAACTGCAGCAGCGACTGAGAGACGATTTTCATGATGAAGATGCACTGCCTAAACCATCTAAGTACAGTCTAAAACAGCGAAGAACAGTTTAATCCAGCATCCCTCGCTCCACTCCTCCCTCTCTTCACCTCCGTCCCACTTTCTCCTCTGTTTTCTGCAGATATCTGGAGTCACATTGGCTGGCATGTGAGCAGTGCTGCGGTTGCGTAATGTGTGTCTCGTCCCCACAGGCTCTCACTGCTCCTCACACTGTCCtcgtcttacacacacacacatacagacttgTTCCAATACCCCGGTGGGGACTCTCAGAAACACAATGATGAGTCTACAATACAAACCAAATGTATGTTTACTCATCTCCGCCAACCCTGAACACCACCATCAATATGCACTTgcaaatacttcattctgtgttatttataagcattttttGAGGGGTGTGGGTGATTGGATtcacagatattaagcagaatgTTCAGGCTGCTCTTTCACATGTAAGATTTCAACTATAATCTGCTCATTTTGAATGGCCATCAGTGTTGAAAGAAGACGAAGATGCAACTACAGTATCAGCCAGCAGGGGGAAACATTAACCAGACCATAATAAATGAACTAATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008728 True 1341 lncRNA 0.46 5 931493 985740

Neighbor

gene id symbol gene type direction distance location
XLOC_003802 NA coding downstream 39819 815925 ~ 891674 (-)
XLOC_003801 syn2b coding downstream 168772 675296 ~ 762721 (-)
XLOC_003800 pparg coding downstream 261935 609516 ~ 669558 (-)
XLOC_003799 CABZ01069324.1 coding downstream 330185 599440 ~ 601308 (-)
XLOC_003798 tsen2 coding downstream 334988 588017 ~ 596505 (-)
XLOC_003805 slc6a1b coding upstream 11360 997100 ~ 1024483 (-)
XLOC_003806 NA coding upstream 79421 1065161 ~ 1088629 (-)
XLOC_003807 slc6a11b coding upstream 109104 1094844 ~ 1131569 (-)
XLOC_003808 atp2b2 coding upstream 162961 1148701 ~ 1291012 (-)
XLOC_003809 iars1 coding upstream 351880 1337620 ~ 1392468 (-)
XLOC_003938 BX324177.10 misc upstream 10353064 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10381854 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10384715 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10395164 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10398093 11383833 ~ 11384130 (-)
XLOC_003797 CU695207.2 non-coding downstream 383095 545461 ~ 548398 (-)
XLOC_003793 CR855375.4 non-coding downstream 471563 459815 ~ 459930 (-)
XLOC_003788 NA non-coding downstream 561807 369127 ~ 369686 (-)
XLOC_003814 NA non-coding upstream 617988 1603728 ~ 1605287 (-)
XLOC_003815 NA non-coding upstream 868691 1854431 ~ 1867925 (-)
XLOC_003816 NA non-coding upstream 925811 1911551 ~ 1915454 (-)
XLOC_003817 NA non-coding upstream 930223 1915963 ~ 1920521 (-)

Expression


Co-expression Network