XLOC_003809 (iars1)


Basic Information

Item Value
gene id XLOC_003809
gene name iars1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1337620 ~ 1392468 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007333
CAGTTGCATCATTTCCGCTGTCTCTGTTCACCGGCGACGGCCAGCATTCATCATGGTGGAAGCAGTGCCAGAGTCCATCCACTTCCCCACTGAGGAGGAGCAAATCCTGCAGTTCTGGCAGAAGAACGACTGTTTCCAGGAGTGTCTGAAGCAGTCAAAGAGCCGGCCCAGGTTCACGTTCTACGACGGGCCGCCCTTCGCCACAGGTCTGCCTCACTATGGTCATATTCTGGCGGGAACCATCAAGGACATCGTGACGCGATTCGCTCATCAGAACGGCTTCCACGTGGAGCGGCGCTTCGGCTGGGACTGCCATGGCCTGCCGGTGGAGTATGAGATCGATAAATCTCTGAACATCAAAGGACCCGAGGATGTGATGAAGATGGGCATCGAGGAGTACAACAAACAGTGCCGGAGCATCGTCATGAGATATGCTGATGAGTGGGAGAACTCGGTGAGGCGGATGGGGCGCTGGATTGACTTCAGGAACGACTATAAGACCCTCTACCCCTGGTTCATGGAGACTGTGTGgtgggtGTTTAAGCAGCTGTATGACAGTGGTCTGGTGTACCGCGGGGTGAAGGTGATGCCGTTCTCCACCGCCTGCAACACTCCGCTCTCCAACTTTGAGGCCAATCAGAACTACAAGgatgtGCAGGACCCGTCAGTGATCGTCAATTTCCCGTTGCTGGAGGATCCGTCTGTCAGCTTGATCGCCTGGACCACCACACCCTGGACCCTCCCCAGCAACCTGGCACTCTGCGTCAACCCAGAGCTCATCTACGTCCGGGTCAAAGACAACAGCTCACAGAAGATCTACATCATGATGGAGGCCAGACTCGTCGCTCTCTTCAAGTCTGACTCTGAATACACCATTCTGGAGCgatttCCTGGCAAGACTCTGAAGGGCAAAAAATACAAGCCTCTTTTCGAGTACTTCATCAAGTGTAAGGAGACCGGTGCCTTCTCGGTAGTGATGGATAATTATGTTCGTGATGATGACGGTACAGGAGTCGTCCATCAGGCCCCGTACTTCGGAGCTGATGATTATCGTGTGTGTATGGAGTATGACATCATCCAGAGAGACTCCGCCCCCATCTGCCCGGTCGACCCATCTGGCATATTCACTCCGGAGGTCACACACTTCGCCGGACAGTATGTGAAGGATGCAGACAAAAACATCATCAAGTGGCTGAAGGAGAACGGACGTCTGGTGAGCGCCAGCTCCTTCAAGCACAGCTACCCGTTCTGCTGGAGGTCGGACACGCCGCTGATCTACAAAGCAGTGCCCAGCTGGTTTATAAGGGTGGAGCACATGGTGGAGAAACTTCTGGACAACAACAGCAAGTGCTACTGGGTGCCAGAGTTTGTGAAGGAGAAGCGTTTCGGGAACTGGCTGAGGGACGCCAGGGACTGGGCGGTGTCCCGCAACCGCTACTGGGGCACACCTATCCCTCTGTGGGTCAGTGACGACTTCGAGGAGgtggtGTGTGTGGGATCCATGGCGGAGCTGGAGGAGCTGACGGGAATTAAAGTCACTGATCTCCACCGAGaaagCATTGACGGCCTCACCATCCCCTCTCGCTGTGGGAAAGGGCAGCTCCGGCGGGTTTCGGAGGTGTTCGACTGCTGGTTCGAGAGCGGCAGTATGCCCTACGCTCAGGTGCACTACCCGTTTGAGAACAGGCGCGAGTTCGAAGACGCATTCCCTGCAGACTTCATCGCAGAGGGCATCGACCAGACCAGAGGATGGTTCTACACGTTACTCGTGCTCTCGACGGCTCTGTTTGGGAAACCGCCATTCAAGAACGTGATCGTCAACGGTTTGGTTTTGGCCAGTGATGGGCAGAAAATGAGCAAGCGGAAGAAGAATTACCCCGACCCCGGACTCATCGTGCAGAGCTACGGTGCAGACGCACTACGGCTGTATCTGATCAACTCTCCTGTGGTTCGAGCTGAAAACCTGCGCTTCAAAGAGGAAGGAGTTCGAGATGTGCTGAAAGACGTCTTCCTACCCTGGTACAATGCATACCGGTTCCTGGTGCAGAACGTCCAGAGACTGCAGAAGGAGGAAGGCGTTGAGTTCCTGTACAACGAGAGGACGTCCAGCGTCAGCAACAACATCATGGATAAATGGATCCAGTCTTTCACACAGTCACTCATTCAGTTCTTCCGGGACGAGATGGGAGcctaCAGACTCTATACTGTGGTGCCCAAGCTTGTCAAGTTTGTGGATATGCTCACTAACTGGTACGTGCGGATGAACCGCCGGCGGCTGAAGGGTGAAAGTGGTTCTGAGGACTGCGTTCGTGCTCTGGAAACCCTCTTCAGTGTCCTGTTCTCCATGTGCAGACTGATGGCTCCGTTCACTCCGTTTATAACCGAGCTGATGTACCAGAACCTGCGGCACCTGCTGGACCCGGCAGCAGTGGAGGAGAAGGACACCGGCAGCATACACTACCTCATGCTGCCACAAGTCAggGAGTCTCTGATTGACCAGCGTATTGAGAGTGCGGTGTCTCGGATGCAGTCGGTCATTGAGTTGGGTCGTGTAATCAGAGACAGGAAGACTCTGCCCATCAAGtatcCGCTGAAGGAGGTGGTGGTCATCCATCAGGACCCAGAGGCTCTCACTGATATCCAGTCCCTGCAGAACTACATCCTGGAGgagCTGAACGTGCGCCAGCTCACTCTCTCCACTGATAAGGACCGATACGGCATCCGTCTGCGGGCCGAACCCGATCACATGGTGCTGGGCAAACGGCTGAAAGGAGCCTTTAAATCCGTGACCGCGTCCATCAAAGAGCTGAAGAGTGAAGAGCTGGAGGAGTTCCAGAAGACAGGTTGTATAGTGGTGGATGGTCATGACCTGCGTGAGGAGGATCTGCGTCTTATGTACACCTTCGATCAGTCGTCTGGATCCGCGTCTCAGTACGAGGCTCACTCAGACGCTCAGGTGCTGGTTCTGCTGGACGTCACGCCGGATCAGGCCATGCTGGACGAAGGAGTGGCCCGAGAGGTCATCAACCGCATCCAGAAACTGCGTAAGAAGggtcACCTGGTGCCGTCAGATGAGATCACGGTGTTCTACCGCTGTCAGCCGGCTGGTGAATATCTGCATCAGGTGATTGGGCACACACAGACTTCATCCTGGCCACCACTAAAGCTCCGCTCAGAGCGTACCCCGTGTGTCCCAACGCCAGCGTCATCGTGCAGGAGAACACACAGctgaaGGGCTCAGATCTGGAGTTGACTATCGTGCGaggctcctcctcttcctccgtCTGCAGGGCTCCTGTGAGCGGCTCGGCGTGTGCGTTTGTGAACCTCAGAGTGTCGCTCAAAGATAAACAGCAGGACGGTGTGGTTCTGCTGGAGAACCCCAAGGGAGACAACAGACTGGacctggagcagctgaagaggatctgctgcagtgtgTTCGGCCTCAACGGAGCTCCAGTCTCCATATTCAACGGCAAGACAGcacTCAGCAGCAGCACTGATCTGCTGTCTCTGAGCGGCAGGACTCTGACTGTGAGCTCGGCTGCGGGTTCGAGTCCTGCAGATGTGAGCAGCTCCGAGTCTCTGCTGTGTCCGTATGTGAACCTGCAGCTCGTCAACGCCAGTCCTGCAGagtgtCGGACTGGAGACGTGGCGACGCTGCTCCTGATGAACCCTGAGGGTAAAAACCTCCTCCAGTTCTCAGATCTGCTGAGAGAAACGGCTAAAGTGTTCGGTCTGAGAGGAAGAAGACTGATGCTCTACACTGATCCACAGCtcactgcagagctgAAGGCGTCCTCTATGAAGACTCTGAACTCGAAGACGCTCTACGTGAAGGTTCTTCCAACAACAGCAGAAGCGTAACTGAAAACATCAtcacgtctgtgtgtgtgttcatgtactGTCAGTGGTGTAGAGGGAAAactattcaataaataaaacaacagcagCTGA

Function

symbol description
iars1 Predicted to enable isoleucine-tRNA ligase activity. Acts upstream of or within regulation of sprouting angiogenesis. Is expressed in brain; head; neural rod; and somite. Orthologous to human IARS1 (isoleucyl-tRNA synthetase 1).

GO:

id name namespace
GO:1903670 regulation of sprouting angiogenesis biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006428 isoleucyl-tRNA aminoacylation biological_process
GO:0000049 tRNA binding molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004822 isoleucine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6325 Predicted to enable isoleucine-tRNA ligase activity. Acts upstream of or within regulation of sprouting angiogenesis. Is expressed in brain; head; neural rod; and somite. Orthologous to human IARS1 (isoleucyl-tRNA synthetase 1).

Ensembl:

ensembl_id ENSDARG00000007955

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007333 True 3957 mRNA 0.55 34 1337620 1392468

Neighbor

gene id symbol gene type direction distance location
XLOC_003808 atp2b2 coding downstream 46608 1148701 ~ 1291012 (-)
XLOC_003807 slc6a11b coding downstream 206051 1094844 ~ 1131569 (-)
XLOC_003806 NA coding downstream 248991 1065161 ~ 1088629 (-)
XLOC_003805 slc6a1b coding downstream 313137 997100 ~ 1024483 (-)
XLOC_003804 NA coding downstream 351880 931493 ~ 985740 (-)
XLOC_003810 rpl29 coding upstream 3702 1396170 ~ 1400634 (-)
XLOC_003811 si:ch211-266k22.6 coding upstream 11273 1403741 ~ 1409236 (-)
XLOC_003812 phactr3b coding upstream 30269 1422737 ~ 1509773 (-)
XLOC_003813 si:ch73-303b9.1 coding upstream 154758 1547226 ~ 1550709 (-)
XLOC_003814 NA coding upstream 211260 1603728 ~ 1605287 (-)
XLOC_003938 BX324177.10 misc upstream 9946336 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9975126 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9977987 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9988436 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9991365 11383833 ~ 11384130 (-)
XLOC_003803 CABZ01066384.1 non-coding downstream 357872 923795 ~ 979748 (-)
XLOC_003802 NA non-coding downstream 445946 815925 ~ 891674 (-)
XLOC_003799 CABZ01069324.1 non-coding downstream 736312 599440 ~ 601308 (-)
XLOC_003815 NA non-coding upstream 461963 1854431 ~ 1867925 (-)
XLOC_003816 NA non-coding upstream 519083 1911551 ~ 1915454 (-)
XLOC_003817 NA non-coding upstream 523495 1915963 ~ 1920521 (-)
XLOC_003821 NA non-coding upstream 818597 2211065 ~ 2222440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_04949557_05007535 IARS coding CI01000057 null 4949557 ~ 5008172 (+)