XLOC_003789 (CR855375.5)


Basic Information

Item Value
gene id XLOC_003789
gene name CR855375.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 394493 ~ 396724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007297
CGGGAGGTGTGTGTGATGCTGTAGGTGCTCACTATAAAACCCGCAGAGAAAACCGAGGGAAAGCCACTGATATATCAGATATATCTGCAGCAGTCCAACAACACAGAGGTGCGTCCACAGGGGAAGGAGAAAACAAGCAGCAGAATGTTACCTTTGACTGAAGCTGGATCTCTCTGCACAGCCTGGATTTTACACTGACCGTCTGTTTCTCTGAGATTATCTGGAATAACTGTGATGGCCAGGGTGTCATTCATACATCTGGGAGTTTTGCTTTTTATTGGACTAACAGTCGCGATGGCCAACGGATTTTCCTCGTTTCGTCCTGAAGCGCTCGTGAAAAGCAGCAGTAAGGATTTCCCCGGAGCCCCAAGCACAAGCGCAGCCCCTCCACATCAGTTTGAGGGTAAAAGCGGAGCCTGTTTGCTCTGCCAGCTCCTGAAACCCCACAGGAGAGACAAGAGATGCACGTGTTACTCCTATAAAGACAAGGAGTGCGTTTACTACTGTCACCTGGACATCATCTGGGTCAACACACCTGAGTAAGTTCATGAGCTGCACAGCAGATAATGACCAACATGTGCTGGAACCTGACACGGGCTTTACTGACTGAGAGGAGCTCTAGACAAGGCAGGGTTACTTCTgttttatacagtgctcagca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109591

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007297 True 661 mRNA 0.49 2 394493 396724

Neighbor

gene id symbol gene type direction distance location
XLOC_003788 NA coding downstream 24807 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 coding downstream 42792 349113 ~ 351701 (-)
XLOC_003786 poc1a coding downstream 85073 306007 ~ 309420 (-)
XLOC_003785 slc11a2 coding downstream 106823 281833 ~ 287670 (-)
XLOC_003784 npffl coding downstream 115165 276057 ~ 279328 (-)
XLOC_003790 znf831 coding upstream 14146 410870 ~ 426525 (-)
XLOC_003791 nuf2 coding upstream 33052 429776 ~ 438518 (-)
XLOC_003792 zgc:77375 coding upstream 60699 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding upstream 63091 459815 ~ 459930 (-)
XLOC_003794 isy1 coding upstream 77709 474433 ~ 486532 (-)
XLOC_003938 BX324177.10 misc upstream 10942080 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10970870 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10973731 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10984180 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10987109 11383833 ~ 11384130 (-)
XLOC_003781 NA non-coding downstream 199778 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 204032 183570 ~ 190461 (-)
XLOC_003776 NA non-coding downstream 265327 128158 ~ 129166 (-)
XLOC_003797 CU695207.2 non-coding upstream 148737 545461 ~ 548398 (-)
XLOC_003799 CABZ01069324.1 non-coding upstream 202716 599440 ~ 601308 (-)
XLOC_003802 NA non-coding upstream 419201 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 527071 923795 ~ 979748 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_05955545_05960873 EDN3 coding CI01000057 null 5955538 ~ 5961098 (-)