XLOC_003776


Basic Information

Item Value
gene id XLOC_003776
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 128158 ~ 129166 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008722
CGGTCTGCCAGCGCAGCAGAGATCAATGGTCGGCTGCTGATCAGAGGAGCCGCTGATTATTGAGATTAAAGGCGTTAATCAGCGCAGAGCCTCCGGTGCCGAAGCGCTGACAGCGGCACAGAGAGCAGGAGCAGCCGCcgccatcaccatcatcatcaccttCATCACCACAGCTGAACAACAGCCCAGCCGGTGAACGACATAATGCACAGCGGCTCATCCTGATCTACAGCAACACTCCACCGACCCGCAGCTGAC
>TCONS_00008723
CCAGAATGCCGCGGTCTGCCAGCGCAGCAGAGATCAATGGTCGGCTGCTGATCAGAGGAGCCGCTGATTATTGAGATTAAAGGCGTTAATCAGCGCAGAGCCTCCGGTGCCGAAGCGCTGACAGCGGCACAGAGAGCAGGAGCAGCCGCcgccatcaccatcatcatcaccttCATCACCACAGCTGAACAACAGCCCAGCCGGTGAACGACAaagaTAACCCATGTTGAATGAGTTGTGTCAGTGTTGATATCCTGCAGCTCTGAGGAGGAGGCGCTTCTTCATCATCATGTTCATTAGAGCGCTGctgcatgatgatgatgatga

Function

GO:

id name namespace
GO:0048762 mesenchymal cell differentiation biological_process
GO:0010718 positive regulation of epithelial to mesenchymal transition biological_process
GO:0060485 mesenchyme development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008722 False 258 lncRNA 0.58 2 128158 129155
TCONS_00008723 True 327 lncRNA 0.54 2 128255 129166

Neighbor

gene id symbol gene type direction distance location
XLOC_003775 arfgap1 coding downstream 373 122634 ~ 127785 (-)
XLOC_003774 elmo2 coding downstream 25001 88247 ~ 103157 (-)
XLOC_003773 CABZ01072245.1 coding downstream 56618 61190 ~ 71540 (-)
XLOC_003772 col2a1b coding downstream 71395 32007 ~ 56763 (-)
XLOC_003771 sp1 coding downstream 99411 19668 ~ 28747 (-)
XLOC_003777 cdk4 coding upstream 6083 135249 ~ 141592 (-)
XLOC_003778 tegt coding upstream 32030 161196 ~ 167451 (-)
XLOC_003779 avil coding upstream 40228 169394 ~ 183328 (-)
XLOC_003780 CU633745.1 coding upstream 54404 183570 ~ 190461 (-)
XLOC_003781 NA coding upstream 64294 193460 ~ 194715 (-)
XLOC_003938 BX324177.10 misc upstream 11209638 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11238428 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11241289 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11251738 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11254667 11383833 ~ 11384130 (-)
XLOC_003787 CR855375.2 non-coding upstream 219947 349113 ~ 351701 (-)
XLOC_003788 NA non-coding upstream 239961 369127 ~ 369686 (-)
XLOC_003793 CR855375.4 non-coding upstream 330649 459815 ~ 459930 (-)

Expression


Co-expression Network