XLOC_003771 (sp1)


Basic Information

Item Value
gene id XLOC_003771
gene name sp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19668 ~ 28747 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007268
AAAACACCCTGCTGGAGAACCTGCTGATCCAGAGGGAGAGGAGGCACTAAggacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcgggccGCAGCTGGGCTCTCAGTATCTCAGACTCGCACACTGGATGATAAGAAAGTATTCTGAACGGCCAAATGTCAAGAGTAGAACCGAAGAAGCCCATTGGCTGCGGCCACAGCGACTCGTCTTCTGATTGGCTCGTCGCTCCGCCGCTTTGACTCTGGCCTTTCTGTTCATCAAGTTCGGTTGAGTTGTTTGAGAGTTCATGTCAGACTTGAAGAAGCGTGAAAAACTCGCGCCCTCGCACAGAATGAGCGatccaCAGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGTCGTCCCCCGGCGGGCAGCAGCTCCGGGCAGCAGGCAGCGGGAACATCCTGACGGTCCCGGGCCTCTTCCAGCAGGCCATTCCTCTGCAGAACCTGAGCGCCGTGCTGCCCAACCAGACGCAGTTCCTGGCCAACGTGCCGCTGAACGCCAACATCACACTGCTGCCGGTGGGGCCCGGGCCCGTAGGCGGAGACACACACACTGCGGTAGCCGCTCCGCCGCAGGGCCCTGAGTTCTGCAGCACCGCCTCCAGCACACGGGCAACAGCAGCAGTGGGCATCGCCACCCTCGCCCAGAGCAGAGCGCCCGCCGCCTCAGACGGGCAGAAGGGGCAGCCGCAGATGCTCCTGCAGGGGGTTCAGCAGGGCGCGGTGTCGGCCCCGGGGCCCGTCTTCACCACACAGACCCTCTCTCAGGACGGCGTGCAGAACGTGCAGATCCAGACCATCGCCAGCGGCAGCCCAATCCTGATCCGCACGCTGGGCGCCGACGGGCAGGTGAGCTGGCAGACGCTGCAGCTGCAGAGCCCCGGTGCCCAGATCACACTGGCTCCCACTGGGGCCTCGGGGCCCGTGCAGCTCTCCGGCCTGCAGACCATCAACCTCAACACACTGGGCAGCGGCGGCCTGCAGATGCAGCCGATACAGATGCCCGTCACCATCGCCAGCGCACCAGGTGAAGCGGCTGCAGACGCTCTGGAGGACAGCGCAGTGCTGGAGGAGAATGCAGAGAGCAGCCCGAACACAGCCAGCAGCAGACGCACACGCAGAGAGGCCTGCACATGCCCCTACTGTAAAGATGGAGAGGGACgAGACCCCAGTAAGAAGAAGCAGCACATCTGCCATATCCCCGGCTGTGGTAAGGTGTACGGGAAGACGTCTCACCTGCGGGCGCACCTGCGCTGGCACACCGGCGAGAGACCCTTCGTCTGCTCCTGGTCCTTCTGCGGGAAACGCTTCACACGCTCCGACGAGCTGCAGagacacaagcgcacacacaccgGAGAGAAGAAGTTCTCATGTACGGAGTGCCCGAAGCGCTTCATGCGCAGTGATCATCTCTCCAAACACATAAAGACACACCTTAACAAGAAGGTGTGTGTGAGCGCGTGCAGTGACCCCGTGACCCCGGCTGCAGATGCAGACCCACAGACACTGCTGACGGTGGACTCCCTCTCAGCCGACAGCTTCACCAGACTGCCCGGCGGGATCAGTGTGATGCAGGTGACGGATCTGCAGTCCATCGGCCTCAGCGGCAGCAACGGATTctagcgcgcacacacacacacaggaagcgGACAGATGTGTATTCCTCTTTTTAATCTCTGATTCTCTGCTCCGCCATCATGCTTTCCTCCATTAATCGGTCGAGCAGACGCAGCTGAAGGCTTCTGCTTTTGTACATAAGTTATATTTTTGTAAGGAGATCTGCGATTTCTGACTTTGTGTTGTTCTGCAGTCGTGAACGCAGCGTtttttattatgtagatgtggTATAACTCTCGTTttgtgctcacacacacacacacacacacacgcacgcgtcCTCTGTTACAGCCGCTCTCCCGCTCGCCCTCGTCTGACAGtggacatgttttgtttttggggAATGTCGAGATTCAGATGCCTTAACGTCTTCCTTTCCTGAAGACTCTTTTATGAATTTGAGTTGAAACCAAAGCTCTCCTCTTCCATGTTAACTCAGGTGAATGTTTCTCTTCATGATTATTAAATTAAGATGAACTCGCA
>TCONS_00007269
GTGAAAAACTCGCGCCCTCGCACAGAATGAGCGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGTGAGCAGCGCGTTTATACCCGAGTTTACCACACAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGTCGTCCCCCGGCGGGCAGCAGCTCCGGGCAGCAGGCAGCGGGAACATCCTGACGGTCCCGGGCCTCTTCCAGCAGGCCATTCCTCTGCAGAACCTGAGCGCCGTGCTGCCCAACCAGACGCAGTTCCTGGCCAACGTGCCGCTGAACGCCAACATCACACTGCTGCCGGTGGGGCCCGGGCCCGTAGGCGGAGACACACACACTGCGGTAGCCGCTCCGCCGCAGGGCCCTGAGTTCTGCAGCACCGCCTCCAGCACACGGGCAACAGCAGCAGTGGGCATCGCCACC
>TCONS_00007270
AGCATCTTCACGGTTGTGTCGAATgtgagcaagtgtgtgtgtgtgtgtgtggttcagaAACGGAGCTCTCTGTGGAGTTTAGCACAGGATGATGAGAGGAAGCCTGAGAGAGATGGAGAAGCATCATCAGACCAGCGGCTGGAGAAGCCGAACACCAGactaacacacacactgcagacgcCTGCTGTGATCAGATCAGCGGAGGACTGACGGAGGCAGAgcagatcagatcagatcaggCAGTGAGCGAGACTGCTATGGGTCACGCCATCACCTGAGAGCACCTACAGCACAGatccaCAGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGTCGTCCCCCGGCGGGCAGCAGCTCCGGGCAGCAGGCAGCGGGAACATCCTGACGGTCCCGGGCCTCTTCCAGCAGGCCATTCCTCTGCAGAACCTGAGCGCCGTGCTGCCCAACCAGACGCAGTTCCTGGCCAACGTGCCGCTGA
>TCONS_00007271
ACTTGAAGAAGCGTGAAAAACTCGCGCCCTCGCACAGAATGAGCGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGTCGTCCCCCGGCGGGCAGCAGCTCCGGGCAGCAGGCAGCGGGAACATCCTGACGGTCCCGGGCCTCTTCCAGCAGGCCATTCCTCTGCAGAACCTGAGCGCCGTGCTGCCCAACCAGACGCAGTTCCTGG
>TCONS_00007272
CCGCTTATGAACGCCGCAGAGTGCCATCTGTAACCGGCGCGAGACTCTGCGggcagtgtgtgtctgtgtgtgtgtgtgttgttgaacTGATTCGCCGAAAACACTGAGCCGTGTTGTTCCTGAGCCGCTGAGTGATCAGGAGTGTTTATAAGCGCTCCATCGCGGACTCTGAGCTGATTTTCCTCAAatccaCAGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGT
>TCONS_00007273
GTTTGAGAGTTCATGTCAGACTTGAAGAAGCGTGAAAAACTCGCGCCCTCGCACAGAATGAGCGatccaCAGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGTGAGCAGCGCGTTTATACCCGAGTTTACCACACAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGG

Function

symbol description
sp1 Enables DNA-binding transcription factor activity and double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain; liver; spinal cord; and testis. Orthologous to human SP1 (Sp1 transcription factor).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04137 Mitophagy - animal
ko04915 Estrogen signaling pathway
ko04928 Parathyroid hormone synthesis, secretion and action
ko04927 Cortisol synthesis and secretion
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05231 Choline metabolism in cancer
ko05224 Breast cancer
ko05163 Human cytomegalovirus infection
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05415 Diabetic cardiomyopathy
ko04934 Cushing syndrome
ko01522 Endocrine resistance
ko03000 Transcription factors
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-2829 Enables DNA-binding transcription factor activity and double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain; liver; spinal cord; and testis. Orthologous to human SP1 (Sp1 transcription factor).

Ensembl:

ensembl_id ENSDARG00000088347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007268 False 2595 mRNA 0.59 6 19668 28224
TCONS_00007269 False 810 mRNA 0.66 3 23827 27872
TCONS_00007270 False 901 mRNA 0.62 3 23970 28747
TCONS_00007271 False 628 mRNA 0.66 3 23985 27884
TCONS_00007272 False 649 mRNA 0.62 3 24114 27822
TCONS_00007273 True 317 mRNA 0.61 3 24359 27903

Neighbor

gene id symbol gene type direction distance location
XLOC_003770 prr13 coding downstream 1219 13179 ~ 18449 (-)
XLOC_003769 MYG1 coding downstream 7321 6899 ~ 12347 (-)
XLOC_003772 col2a1b coding upstream 3260 32007 ~ 56763 (-)
XLOC_003773 CABZ01072245.1 coding upstream 32443 61190 ~ 71540 (-)
XLOC_003774 elmo2 coding upstream 59500 88247 ~ 103157 (-)
XLOC_003775 arfgap1 coding upstream 93887 122634 ~ 127785 (-)
XLOC_003776 NA coding upstream 99411 128158 ~ 129166 (-)
XLOC_003938 BX324177.10 misc upstream 11310057 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11338847 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11341708 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11352157 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11355086 11383833 ~ 11384130 (-)
XLOC_003780 CU633745.1 non-coding upstream 154823 183570 ~ 190461 (-)
XLOC_003781 NA non-coding upstream 164713 193460 ~ 194715 (-)
XLOC_003787 CR855375.2 non-coding upstream 320366 349113 ~ 351701 (-)

Expression


Co-expression Network