XLOC_003769 (MYG1)


Basic Information

Item Value
gene id XLOC_003769
gene name MYG1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6899 ~ 12347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007262
TGCGCAGAAGCCGTGGGTCACCAAGCTGAGCTCCGCCGGTCTGGTGTACGTTCATTACGGGAGACGCGTCCTGCAGCAGCTCACACACCTGCAGGAGGACGAGCCACAGCTGGAGGTGCTGTACGACAAgATGTACGAGGGGTTCGTGGAGGAGGTGGATGCGGTGGATAATGGCATCAGTCAGAGTGACGGAGAGCAGCGCTACACCATCAGCTCCACCATCAGCAGCAGAGTCAGTTACCTGAACCCTCAGTGGAACAGCAAAGAGCAGGACacagagGAGGGTTTCCGGAAAGCTCTGGCGCTCGTGGGCTCTGAGTTCCAGGACCGGCTGCTGTACTTCACCAATGCCTGGCTGCCGGCACGGGACGTGGTGCTGCAGGCGATCAAGAGCCGACACCAgGAAGTGGAGCAGCAGACACAGGAAGTGGACGACAGCAGATCTGCCGAACTGACTCTTGCATACAGATgagaaaactgaataaacaaatacaaaaccaGAA
>TCONS_00007263
ATGACGCATGCGCACACTGCATCTCCCGTCCGGCTGGCGGCGCTGCAGaggagacagagcagcagcagaGGAAGCAGCAGCAGCCGGAATCATCAGATGAGAGTGTGCTCTCGGCTCCTCAGCTCAGTGTTGATCAATAAACATCatctgatgaagatgaagatgaagatcgGCACTCACAACGGAACTTTCCACTGTGATGAAGTCCTGGCGTGTTTCCTGCTGCGGCAGCTCCCGGAATACAAGGATGCAGAGATCGTGCGCAGCAGAGATGCTTCAGTTCTGGCTGAGTGTGATGTTGTGGTGGATGTAGGAGGAGAATATGACCACAGCCGGCAGCGCTACGACCATCAccagagGGCGTTCGCGGAGAGTTTCCACAGTGTGTGTGCGCAGAAGCCGTGGGTCACCAAGCTGAGCTCCGCCGGTCTGGTGTACGTTCATTACGGGAGACGCGTCCTGCAGCAGCTCACACACCTGCAGGAGGACGAGCCACAGCTGGAGGTGCTGTACGACAAgATGTACGAGGGGTTCGTGGAGGAGGTGGATGCGGTGGATAATGGCATCAGTCAGAGTGACGGAGAGCAGCGCTACACCATCAGCTCCACCATCAGCAGCAGAGTCAGTTACCTGAACCCTCAGTGGAACAGCAAAGAGCAGGACacagagGAGGGTTTCCGGAAAGCTCTGGCGCTCGTGGGCTCTGAGTTCCAGGACCGGCTGCTGTACTTCACCAATGCCTGGCTGCCGGCACGGGACGTGGTGCTGCAGGCGATCAAGAGCCGACACCAgGTGGATGTGAGCGGGCAGGTGCTGCTGCTGCAGCAGGGCGGGTGTCCGTGGAAGGAGCACCTGTTTGCTCTGGAGAAGGAGCTGCAGCTGCAGGAGCTCATCAAGTTTGTGCTGTACTGCGATCAGAACGGCCACTGGAGGGTGCAGTGTGTGCCGGCCGGACCCAACACCTTCCAGAACCGGTTGAGTCTGCTGGAGGAGTGGCGAGGGCTGCGTGACGATGCGCTGTCAGAGCTCAGTGGAATCCCAGAATGCATCTTTGTGCACGCCGGCGGCTTCATCGGCGGAAACAAGACGCAGAGCGGCGCTCTGGAGATGGCCAGGAGAACACTGCAGACGGCCCCtactcactgacacacacacacacacacacacacacacacacacacacaggtgatcAGCACACCCCTGCTCAGGCTCTACTGTTTGTTTTGATGTGATATTTGTGTGTTCTGTGGAGGAAGTGGAGCAGCAGACACAGGAAGTGGACGACAGCAGATCTGCCGAACTGACTCTTGCATACAGATgagaaaactgaataaacaaatacaaaaccaGAA
>TCONS_00007264
ttattaaataaaaaaaagatcctTAAATATGACGCATGCGCACACTGCATCTCCCGTCCGGCTGGCGGCGCTGCAGaggagacagagcagcagcagaGGAAGCAGCAGCAGCCGGAATCATCAGATGAGAGTGTGCTCTCGGCTCCTCAGCTCAGTGTTGATCAATAAACATCatctgatgaagatgaagatgaagatcgGCACTCACAACGGAACTTTCCACTGTGATGAAGTCCTGGCGTGTTTCCTGCTGCGGCAGCTCCCGGAATACAAGGATGCAGAGATCGTGCGCAGCAGAGATGCTTCAGTTCTGGCTGAGTGTGATGTTGTGGTGGATGTAGGAGGAGAATATGACCACAGCCGGCAGCGCTACGACCATCAccagagGGCGTTCGCGGAGAGTTTCCACAGTGTGTGTGCGCAGAAGCCGTGGGTCACCAAGCTGAGCTCCGCCGGTCTGGTGTACGTTCATTACGGGAGACGCGTCCTGCAGCAGCTCACACACCTGCAGGAGGACGAGCCACAGCTGGAGGTGCTGTACGACAAgATGTACGAGGGGTTCGTGGAGGAGGTGGATGCGGTGGATAATGGCATCAGTCAGAGTGACGGAGAGCAGCGCTACACCATCAGCTCCACCATCAGCAGCAGAGTCAGTTACCTGAACCCTCAGTGGAACAGCAAAGAGCAGGACacagagGAGGGTTTCCGGAAAGCTCTGGCGCTCGTGGGCTCTGAGTTCCAGGACCGGCTGCTGTACTTCACCAATGCCTGGCTGCCGGCACGGGACGTGGTGCTGCAGGCGATCAAGAGCCGACACCAgGTGGATGTGAGCGGGCAGGTGCTGCTGCTGCAGCAGGGCGGGTGTCCGTGGAAGGAGCACCTGTTTGCTCTGGAGAAGGAGCTGCAGCTGCAGGAGCTCATCAAGTTTGTGCTGTACTGCGATCAGAACGGCCACTGGAGGGTGCAGTGTGTGCCGGCCGGACCCAACACCTTCCAGAACCGGtaagacacacacatatatacacaccctcacacacacacacacacacacacacgcagctgAGAGTGTGTTCTGTGCTGTGCTGTGCAGGTTGAGTCTGCTGGAGGAGTGGCGAGGGCTGCGTGACGATGCGCTGTCAGAGCTCAGTGGAATCCCAGAATGCATCTTTGTGCACGCCGGCGGCTTCATCGGCGGAAACAAGACGCAGAGCGGCGCTCTGGAGATGGCCAGGAGAACACTGCAGACGGCCCCtactcactgacacacacacacacacacacacacacacacacacacacaggtgatcAGCACACCCCTGCTCAGGCTCTACTGTTTGTTTTGATGTGATATTTGTGTGTTCTGTGGAGGAAGTGGAGCAGCAGACACAGGAAGTGGACGACAGCAGATCTGCCGAACTGACTCTTGCATACAGATgagaaaactgaataaacaaatacaaaacca
>TCONS_00007265
GAATCATCAGATGAGAGTGTGCTCTCGGCTCCTCAGCTCAGTGTTGATCAATAAACATCatctgatgaagatgaagatgaagatcgGCACTCACAACGGAACTTTCCACTGTGATGAAGTCCTGGCGTGTTTCCTGCTGCGGCAGCTCCCGGAATACAAGGATGCAGAGATCGTGCGCAGCAGAGATGCTTCAGTTCTGGCTGAGTGTGATGTTGTGGTGGATGTAGGAGGAGAATATGACCACAGCCGGCAGCGCTACGACCATCAccagagGGCGTTCGCGGAGAGTTTCCACAGTGTGTGTGCGCAGAAGCCGTGGGTCACCAAGCTGAGCTCCGCCGGTCTGGTGTACGTTCATTACGGGAGACGCGTCCTGCAGCAGCTCACACACCTGCAGGAGGACGAGCCACAGCTGGAGATGTACGAGGGGTTCGTGGAGGAGGTGGATGCGGTGGATAATGGCATCAGTCAGAGTGACGGAGAGCAGCGCTACACCATCAGCTCCACCATCAGCAGCAGAGTCAGTTACCTGAACCCTCAGTGGAACAGCAAAGAGCAGGACacagagGAGGGTTTCCGGAAAGCTCTGGCGCTCGTGGGCTCTGAGTTCCAGGACCGGCTGCTGTACTTCACCAATGCCTGGCTGCCGGCACGGGACGTGGTGCTGCAGGCGATCAAGAGCCGACACCAgGTGGATGTGAGCGGGCAGGTGCTGCTGCTGCAGCAGGGCGGGTGTCCGTGGAAGGAGCACCTGTTTGCTCTGGAGAAGGAGCTGCAGCTGCAGGAGCTCATCAAGTTTGTGCTGTACTGCGATCAGAACGGCCACTGGAGGGTGCAGTGTGTGC

Function

symbol description
myg1 Predicted to be active in cytoplasm and nucleus. Orthologous to human MYG1 (MYG1 exonuclease).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-32 Predicted to be active in cytoplasm and nucleus. Orthologous to human MYG1 (MYG1 exonuclease).

Ensembl:

ensembl_id ENSDARG00000069977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007262 False 503 mRNA 0.57 4 6899 10058
TCONS_00007263 False 1352 mRNA 0.57 7 6899 12319
TCONS_00007264 False 1465 mRNA 0.56 6 6902 12347
TCONS_00007265 True 845 mRNA 0.58 6 7393 12233

Neighbor

gene id symbol gene type direction distance location
XLOC_003770 prr13 coding upstream 832 13179 ~ 18449 (-)
XLOC_003771 sp1 coding upstream 7321 19668 ~ 28747 (-)
XLOC_003772 col2a1b coding upstream 19660 32007 ~ 56763 (-)
XLOC_003773 CABZ01072245.1 coding upstream 48843 61190 ~ 71540 (-)
XLOC_003774 elmo2 coding upstream 75900 88247 ~ 103157 (-)
XLOC_003938 BX324177.10 misc upstream 11326457 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11355247 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11358108 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11368557 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11371486 11383833 ~ 11384130 (-)
XLOC_003776 NA non-coding upstream 115811 128158 ~ 129166 (-)
XLOC_003780 CU633745.1 non-coding upstream 171223 183570 ~ 190461 (-)
XLOC_003781 NA non-coding upstream 181113 193460 ~ 194715 (-)
XLOC_003787 CR855375.2 non-coding upstream 336766 349113 ~ 351701 (-)

Expression


Co-expression Network