XLOC_003774 (elmo2)


Basic Information

Item Value
gene id XLOC_003774
gene name elmo2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 88247 ~ 103157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007277
atTGTTCTGGAAAACAGCAGTCGTGAGGATAAGCACGAGTGTCCGTTCGCGCGCTGTGCTATCGAGCTGACGCGGGtgctgtgtgatattctgcagGTCGGAGAGCTGCCGAATGAAGGCTGTAATGACTTCCACCCCATGTTCTTCACACACGAGCGCGCCTGGGAAGAGTTCTTCTGCGTCTGCATACAGCTGCTCAACAAGACATGGAAGGAGATGAGGGCCACTGCTGAAGACTTCaacaaggtgatgACGGTGGTGCGTGAGCAGATCACCCGGGCTCTGGCCCTGAAGCCTGCGTCTCTGGATCAGCTGCGGCTGAAGCTGCGCTCTCTGAGTTACTCTGAGATTCTGCGACTGCGTCAGTCCGAGAGAATGAGCCAAGATGACTTCCAGTCGCCGCCCATCATTGAGCTGCGGGAGCGGATCCAGCCGGAGATCCTGGAGCTCATCAAGCAGCAGAGGCTCAGTCGGCTCTGTGAGGGAAGCTGCTTCCGCAAACTGGGGAACCGACGCCGGCAGGAGAAGTTCTGGTTCTGCCGGCTCTCACTGAACCACAAGCTGCTCCATTATGGGGATCTGGAGGAGTCTCCACAGGGTGAGGTGCCACTGGAGCTGCTGACCGACAAGATCGCCGTGTCCGACATTAAAGCTGTGCTGACGGGGAAAGACTGTCCGCATATGAAGGAGAAGAGCGCGCTCAAGCAGAACAAGgAAGTGTTGGAGCTGGCGTTCTCCATCCTCTACGACCCTGACGAGTCCCTCAACTTCGTGGCACCAAACAAATATGAGtACTGTATCTGGACAGACGGCCTGTCAGCTCTGCTAGGGAAGGATCTGTCCAGTGACCTCACACGAAGTGACCTTGACACACTAATGAGTATGGAGATGAAGCTCCGCCTCCTGGACCTGGAGAACATCACCATCCCTGAGGCTCCGCCCCCCGTGCCCAAAGAGCCCAGCAGCTACAACTTCAGCTACAACTACGGCTGAGCGGCGGCGCGGAGTGTGTGTGTTATAGAGACGGCACACACACTTTACTGAACACACACCGTACGAGTTCTCCATTCCTTCATGTCAGAAACACtctgctgtgcgtgtgtgtgcgtgtgcgtgtgtgtgtgaaacgcTTCAACTAAACAGAAGGGTTAGCTCCTTTATACACACAGATGACTAATATTTGCTGATGTTTGATTTGTCAATAGAAATCTATTTTTGTACGTGATGTGAAAGACGTGACGCTGCATGAAGCGGAGGAGAActcagatccacacacacacacagacacaccctCTCTGGAGGACTCGCCGTCACCGCAGACACGCCGCTCCTTTACCTTGCTCCTTTATTTGCTCAGATTGCTGTGGTGGATTTATATTTGCTTGACCTAGCGTACGAGTCTTGTGTGTGAGAGCCGATCTCGGACAGATCTCTGGATGTTTGCTGCATCATAAGCTGGTCGTTTCGGATGTTTTAGTGGGCAGATGTGTCAATATTTGATTTGAAATACTGtacacactttatatatatatatatatacacacacagtgttGATCATAAATGAGTgccccctcacagatctctcctTTAAATGAACATGTCCCACAGGGCGCTTACAgttatatatttgtgcatattcatAGTCAGATCTTTTAAAGAGTAACTCTGTTGAATTGAAAGCTATTATTTGTCTATAATCTTCATTTAAATGCAGCTTGATATATTGAGAGTGGATTACAGTATTCATTTCTAACAGGGGGTGTACTCATTAATGCTTAacgctgaatatatatatatatatatctatatcttaAATATCTGTTTATATAGTGTCTTCAGAAAGTATTGATCCCTTGATTTCTCATTGTGAGAAGCTGACTGATGAGTGTGGTGTTTGTGAAGGGTTAAACCTTATAAAGCTGAAGATGGCGGTGTAAGACAGACGGGTGTGAATACTTCCTCAAGGCCACTGTATATCAGTTGTATATAATGTGCTGCCTTATCACAGTGAACGCAATGGATCTGTGTGCAATAATACCCGTGTTAACGTCATAGCTTGATATTTACATTAGACTCTTCATCTGTTTGATCATATGAGCTGTGCTGCACATCCTCAATAAATGCAGTTATCAACAAAcca
>TCONS_00007278
atGCCTCCTCCATCAGACATTGTGAAGGTGGCCATTGAGTGGCCGGGAGCCAACGCTCAGCTCATCGAGATCGACCAGGTAATCCTCAGCCCTCGTCACCAACACTACAGTAATACTCGCGGTGAGATTAAGAACGGCACGATCCTCCGTCTGGCCATCTCTCCGatgcgTGCGGCCCGTCAGCTGCTGGAGCGTATCCAGTCTCACAGTATTGATGCACGTTTGGAGGCGCTGAAGGAACTGGCCAAACTCTCAGCCGACGCCGCCTTCGCCAGCGAGTTCATCAACATCGACGGACTGGTGACGCTGGCACGACTGGTGGAGAGCGGCACTCAtttcgGGGAGATGCTGGCCTTCACTCTGACGGCGTTTCTGGAGCTGATGGATCATGGGATTGTGTCGTGGGAGCTGCTCTCACTGTCCTTCATCAAACAGATTGCAGGTTACGTGAACCAGCCGATGGTAGACGTGTCGATCCTGCAGCGCTCGCTGGCCATCCTGGAGAGTATGGTGTTGAACAGCCACAGCCTGTACCAGCGGGTGGCGCAGGAGACCACAGTCGCACAACTCATCACACACCTGCAAGTgtccaACCAGGAGATCCAGACGTACGCCATCGCCCTCATCAACGCCCTGTTCCTCAAAACCCCGGAGGACCGAcgccaggagATGGCGGCGACGCTGGCTCAGAGACACCTGCGCGCCATCATCCTCAATCACATCATCCGGGGGAACCGGCCCGTGAAGGCGGAGATGGCGCATCAGCTGTACGTGCTGCAGGTGCTGACCTTTAACCTTCTGGAGGAGCGCATGATGACCAAGATGGACCCCAATGACCAGactcAGAGAGATGTGATCTTCGAGCTGCGCAGGATTGCGTTTGATGGAGACGCAGCAGAACCCAGCGGAACCGAGAAGAGGAAAGCGGCGGCCCACACCAAAGACTACAGGATGCTGGGATTCAGCGTCAGTGCACactattcagtgtgtGACACATACATcagggtaacacacacacacacacacacacacagtatTGTTCTGGAAAACAGCAGTCGTGAGGATAAGCACGAGTGTCCGTTCGCGCGCTGTGCTATCGAGCTGACGCGGGtgctgtgtgatattctgcagGTCGGAGAGCTGCCGAATGAAGGCTGTAATGACTTCCACCCCATGTTCTTCACACACGAGCGCGCCTGGGAAGAGTTCTTCTGCGTCTGCATACAGCTGCTCAACAAGACATGGAAGGAGATGAGGGCCACTGCTGAAGACTTCaacaaggtgatgACGGTGGTGCGTGAGCAGATCACCCGGGCTCTGGCCCTGAAGCCTGCGTCTCTGGATCAGCTGCGGCTGAAGCTGCGCTCTCTGAGTTACTCTGAGATTCTGCGACTGCGTCAGTCCGAGAGAATGAGCCAAGATGACTTCCAGTCGCCGCCCATCATTGAGCTGCGGGAGCGGATCCAGCCGGAGATCCTGGAGCTCATCAAGCAGCAGAGGCTCAGTCGGCTCTGTGAGGGAAGCTGCTTCCGCAAACTGGGGAACCGACGCCGGCAGGAGAAGTTCTGGTTCTGCCGGCTCTCACTGAACCACAAGCTGCTCCATTATGGGGATCTGGAGGAGTCTCCACAGGGTGAGGTGCCACTGGAGCTGCTGACCGACAAGATCGCCGTGTCCGACATTAAAGCTGTGCTGACGGGGAAAGACTGTCCGCATATGAAGGAGAAGAGCGCGCTCAAGCAGAACAAGgAAGTGTTGGAGCTGGCGTTCTCCATCCTCTACGACCCTGACGAGTCCCTCAACTTCGTGGCACCAAACAAATATGAGtACTGTATCTGGACAGACGGCCTGTCAGCTCTGCTAGGGAAGGATCTGTCCAGTGACCTCACACGAAGTGACCTTGACACACTAATGAGTATGGAGATGAAGCTCCGCCTCCTGGACCTGGAGAACATCACCATCCCTGAGGCTCCGCCCCCCGTGCCCAAAGAGCCCAGCAGCTACAACTTCAGCTACAACTACGGCTGA
>TCONS_00007279
ACTCGCGGTGAGATTAAGAACGGCACGATCCTCCGTCTGGCCATCTCTCCGatgcgTGCGGCCCGTCAGCTGCTGGAGCGTATCCAGTCTCACAGTATTGATGCACGTTTGGAGGCGCTGAAGGAACTGGCCAAACTCTCAGCCGACGCCGCCTTCGCCAGCGAGTTCATCAACATCGACGGACTGGTGACGCTGGCACGACTGGTGGAGAGCGGCACTCAtttcgGGGAGATGCTGGCCTTCACTCTGACGGCGTTTCTGGAGCTGATGGATCATGGGATTGTGTCGTGGGAGCTGCTCTCACTGTCCTTCATCAAACAGATTGCAGGTTACGTGAACCAGCCGATGGTAGACGTGTCGATCCTGCAGCGCTCGCTGGCCATCCTGGAGAGTATGGTGTTGAACAGCCACAGCCTGTACCAGCGGGTGGCGCAGGAGACCACAGTCGCACAACTCATCACACACCTgtccaACCAGGAGATCCAGACGTACGCCATCGCCCTCATCAACGCCCTGTTCCTCAAAACCCCGGAGGACCGAcgccaggagATGGCGGCGACGCTGGCTCAGAGACACCTGCGCGCCATCATCCTCAATCACATCATCCGGGGGAACCGGCCCGTGAAGGCGGAGATGGCGCATCAGCTGTACGTGCTGCAGGTGCTGACCTTTAACCTTCTGGAGGAGCGCATGATGACCAAGATGGACCCCAATGACCAG
>TCONS_00007280
GTGAAGGTGGCCATTGAGTGGCCGGGAGCCAACGCTCAGCTCATCGAGATCGACCAGaagAAGCCTCTGGCCTCCATCATTCGAGAAGTGTGTGAGGG

Function

symbol description
elmo2 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within several processes, including apoptotic process; cell-cell adhesion; and phagocytosis. Predicted to be located in cytoplasm. Is expressed in brain; mid cerebral vein; and retinal ganglion cell layer. Orthologous to human ELMO2 (engulfment and cell motility 2).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007010 cytoskeleton organization biological_process

KEGG:

id description
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05100 Bacterial invasion of epithelial cells

ZFIN:

id description
ZDB-GENE-140106-84 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within several processes, including apoptotic process; cell-cell adhesion; and phagocytosis. Predicted to be located in cytoplasm. Is expressed in brain; mid cerebral vein; and retinal ganglion cell layer. Orthologous to human ELMO2 (engulfment and cell motility 2).

Ensembl:

ensembl_id ENSDARG00000063527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007277 False 2140 mRNA 0.48 8 88247 97817
TCONS_00007278 False 2028 mRNA 0.57 18 89394 103157
TCONS_00007279 False 720 mRNA 0.59 7 99257 101758
TCONS_00007280 True 98 mRNA 0.58 2 102605 103136

Neighbor

gene id symbol gene type direction distance location
XLOC_003773 CABZ01072245.1 coding downstream 16707 61190 ~ 71540 (-)
XLOC_003772 col2a1b coding downstream 31484 32007 ~ 56763 (-)
XLOC_003771 sp1 coding downstream 59500 19668 ~ 28747 (-)
XLOC_003770 prr13 coding downstream 69798 13179 ~ 18449 (-)
XLOC_003769 MYG1 coding downstream 75900 6899 ~ 12347 (-)
XLOC_003775 arfgap1 coding upstream 19477 122634 ~ 127785 (-)
XLOC_003776 NA coding upstream 25001 128158 ~ 129166 (-)
XLOC_003777 cdk4 coding upstream 32092 135249 ~ 141592 (-)
XLOC_003778 tegt coding upstream 58039 161196 ~ 167451 (-)
XLOC_003779 avil coding upstream 66237 169394 ~ 183328 (-)
XLOC_003938 BX324177.10 misc upstream 11235647 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11264437 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11267298 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11277747 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11280676 11383833 ~ 11384130 (-)
XLOC_003780 CU633745.1 non-coding upstream 80413 183570 ~ 190461 (-)
XLOC_003781 NA non-coding upstream 90303 193460 ~ 194715 (-)
XLOC_003787 CR855375.2 non-coding upstream 245956 349113 ~ 351701 (-)
XLOC_003788 NA non-coding upstream 265970 369127 ~ 369686 (-)

Expression


Co-expression Network