XLOC_003779 (avil)


Basic Information

Item Value
gene id XLOC_003779
gene name avil
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 169394 ~ 183328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007285
ATCTGTGGAGAAACATCTGCTCAGACCTACAGTCTCGCACACGCCGCTGAATCATGCAGAACACGTTCCGCGCCGTCACAAACTCTGCAGGAGTCCTCATCTGGAGGATCGAGAAGATGGATCTGGTTTTGATCCCAGAAAAGTTTCATGGACAGTTTTTTGATGGAGACTGCTACCTGTTGCTCTCAACATGCAAATCTGGCAAAACGATATCTTATGACATCCATTACTGGATCGGCTCTGCATCGTCAATAGATGAGCAGGGCGCCGCAGCGATGTACGCCGTCCAGCTGGACGAGTTCCTGGGCTCCACACCGGTGCAGCACCGCGAGGTCCAGCAGCACGAGTCCAGCATGTTCTGCGGATACTTCAAACAGGGCATCATCTATAAGTCAGGTGGAGTGGCTTCAGGGATGAACCATGTGGAGACCAACACTTATAACATCCAGAGACTGCTGCACGTGAAGGGACGCAGGAAAGTGACCGGCACAGAGGTGGAGGTGAGCTGGAAGAGCTTCGACACAGGCAGTGTGTTTCTGCTGGATCTGGGAAAGACCATTATCCAGTGGAACGGGCCGGAAAGCAACACACAGGAGCGTCTGAAGGGCATGATGCTGGCCAAGGATATCCGGGACCGAGAGCGCGGCGGGCGGGCAGAGATCGGGGTGATTGAGGGCGATGCGGAGGCCGCCGCTCCGCTGCTGATGCAGGTGATGCTGAGCATTCTGGGAGAGCGACCCTCGACCCTACCCAGCGGCACGCCGGACGACGTCACTGACCGCGAGCAGATGGCCAAACTCACCCTCTACCATGTGTCAGATGCCAACGGGACGATGCAGATCACCGAGATCGCAACCAGTCCACTAACCCAGGACCTGCTGAATCATGACGACTGCTACATCTTGGACCAGGGGGGCGTGTCCATCTTCGTGTGGAAGGGAAAGATGGCCAATAAGGCGGAGAGACAAGCAGCGATGACCCGAGCTCTGGAGTTCATCAAGCTGAAGAATTACCCGCTCAGCACCAAAGTGGAGTCCATCTGTGACGGAGGAGAATCAGCTCTGTTCAAGCAGCTCTTCAAGAACTGGACAGTCAAAGACCAGACGCAGGGCCTGGGCCGCACACACACTGTTGGAAAAATCgCTGATGTTCCTCAGGAGAAGTTTGATGCCAGCCGGATGCACATGATGCCGGAGGTGGCGGCGCAGGAGCGCATGGTGGACGACGGCAGCGGGGAGAAACagGTGTGGCGTATCGAGAACCTGGAGCTGGCGGAGGTCAGCAAAGCTACACACGGGTTTTTCTATGGAGGAGACTGCTATCTGATTCTCTACAGCTACGAGGTCAACGGCAGGAAAAACTACATCCTCTACATGTGGAGGGGCCGGCATGCGTCTCAGGATGAAGTGACGGCGTGTGCGTATCATGCGGTGACGGTGGATCAGCAGTACGGAGGTCAGCCGGTGCAGGTGTCCGTCACCATGGGGAAGGAGCCACGACACTTCACCTCCATCTTCAAGGGCAAGATGGTGATCTATGAGGGTGGGACGTCCCGTAAGGGCCCAGTGGAGCCAGAGCCGCCCGTCCGGCTGTTCCAGATCTGCGGCTCGCACCCATCCAGCACTCGCGCCGTGGAGGTTCCAGCGCTGGCGGCGTCGCTCAACTCCAACGACGTGTTCCTGCTGAAGAGCCAGAGCGGAGTTTACCTGTGGTACGGGAAAggcTCCAGCGGGGACGAGCGTGCGATGGCGAAGGATCTGAGTGTGATCATGGGTCGCTCAGAGCAGGTGATGGCGGAGGGTCAGGAGCCGGAGGAGTTCTGGCAGAGTCTGGGTGGACGAACGCCATACGCCAGCGACCGacgTTTGCAGCAGGTGACTCTGGAGCACCAGCCGCGTCTCTTCGAGTGCTCCAATAAGACGGGACGCTTCACAGCCACTGAGGTCACGCAGTTCACACAGGACGACCTGCGGGAGGACGACGTCATGCTGCTGGACACCTGGGACCAGATATTCCTCTGGATGGGGAATGAGGCCAATGATGTGGAGCGGCGCGAGTGTGTGCCTACCTGTGCCGAGTACCTGCGGACACACCCCGGCTCCAGAGACCCCGACACCCCCATTGTCATCATCAAGCAGGGCTTCGAGCCACCCACATTCACCGGCTGGTTCACTGCCTGGGACCCTAGCAAGTGGAGTGGAGGAAAAACGTACGAGCAGCTGAAGCAGGAGCTGGGAGATGTGACGCTGCCGAGCACCATTCAATACATCTCCGATGCTCCAGAGAATAACATCATCTCTGAGTATCCAGCGGCGCTGCTGGTGAACAAGAGCACTGAAGATCTGCCCAAAGATGTGGATCCAGCACAGAGAGAgAAGCACCTCTCGGAGGCAGATTTCCAGGCAGTGTTCGGGATCTCTAAGGAGGCGTTCAGCTGTTTGCCGCAGTGGAAGCAGGCCCGGATGAAGAAGCAGAAAGGCTTGTTCTGAAACTCAGATATAGGCAGATGGAGATgttcatcatttactctcactAATTCAATGAGGAGTTTTTAACCTTTCATCATCATTGTACAAGTGTGGATGTGTTACACTGTACGTTTTTTGTGGGACTttttaagggaaaaaataaaaaagtttgtatTT
>TCONS_00008438
TGTGGAGAAACATCTGCTCAGACCTACAGGTACTCAGACGTGTGCTCTGGTGACAGTAGAGCTGCTCCATCAACAGCTGTTGTTAAAGAGAGACAGGTACTGTTAGTGAAGGTGTAAAAGTGTTGGTTTAAAGCTGAATTCTGCTTTCAGTCTCGCACACGCCGCTGAATCATGCAGAACACGTTCCGCGCCGTCACAAACTCTGCAGGAGTCCTCATCTGGAGGATCGAGAAGATGGATCTGGTTTTGATCCCAGAAAAGTTTCATGGACAGTTTTTTGATGGAGACTGCTACCTGTTGCTCTCAACATGCAAATCTGGCAAAACGATATCTTATGACATCCATTACTGGATCGGCTCTGCATCGTCAATAGATGAGCAGGGCGCCGCAGCGATGTACGCCGTCCAGCTGGACGAGTTCCTGGGCTCCACACCGGTGCAGCACCGCGAGGTCCAGCAGCACGAGTCCAGCATGTTCTGCGGATACTTCAAACAGGGCATCATCTATAAGTCAGGTGGAGTGGCTTCAGGGATGAACCATGTGGAGACCAACACTTATAACATCCAGAGACTGCTGCACGTGAAGGGACGCAGGAAAGTGACCGGCACAGAGGTGAGGGA

Function

symbol description
avil Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping and cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Human ortholog(s) of this gene implicated in nephrotic syndrome type 21. Orthologous to human AVIL (advillin).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-060421-6683 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping and cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Human ortholog(s) of this gene implicated in nephrotic syndrome type 21. Orthologous to human AVIL (advillin).

Ensembl:

ensembl_id ENSDARG00000059342

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007285 False 2645 mRNA 0.56 20 169394 183328
TCONS_00008438 True 620 lncRNA 0.51 4 178319 183325

Neighbor

gene id symbol gene type direction distance location
XLOC_003778 tegt coding downstream 1943 161196 ~ 167451 (-)
XLOC_003777 cdk4 coding downstream 27802 135249 ~ 141592 (-)
XLOC_003776 NA coding downstream 40228 128158 ~ 129166 (-)
XLOC_003775 arfgap1 coding downstream 41609 122634 ~ 127785 (-)
XLOC_003774 elmo2 coding downstream 66237 88247 ~ 103157 (-)
XLOC_003780 CU633745.1 coding upstream 242 183570 ~ 190461 (-)
XLOC_003781 NA coding upstream 10132 193460 ~ 194715 (-)
XLOC_003782 dusp7 coding upstream 37216 220544 ~ 236766 (-)
XLOC_003783 alas1 coding upstream 77435 260763 ~ 270210 (-)
XLOC_003784 npffl coding upstream 92729 276057 ~ 279328 (-)
XLOC_003938 BX324177.10 misc upstream 11155476 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11184266 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11187127 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11197576 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11200505 11383833 ~ 11384130 (-)
XLOC_003773 CABZ01072245.1 non-coding downstream 97854 61190 ~ 71540 (-)
XLOC_003787 CR855375.2 non-coding upstream 165785 349113 ~ 351701 (-)
XLOC_003788 NA non-coding upstream 185799 369127 ~ 369686 (-)
XLOC_003793 CR855375.4 non-coding upstream 276487 459815 ~ 459930 (-)

Expression


Co-expression Network