RNA id: TCONS_00008438


Basic Information

Item Value
RNA id TCONS_00008438
length 620
lncRNA type sense_over
GC content 0.51
exon number 4
gene id XLOC_003779
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 169394 ~ 183328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGAGAAACATCTGCTCAGACCTACAGGTACTCAGACGTGTGCTCTGGTGACAGTAGAGCTGCTCCATCAACAGCTGTTGTTAAAGAGAGACAGGTACTGTTAGTGAAGGTGTAAAAGTGTTGGTTTAAAGCTGAATTCTGCTTTCAGTCTCGCACACGCCGCTGAATCATGCAGAACACGTTCCGCGCCGTCACAAACTCTGCAGGAGTCCTCATCTGGAGGATCGAGAAGATGGATCTGGTTTTGATCCCAGAAAAGTTTCATGGACAGTTTTTTGATGGAGACTGCTACCTGTTGCTCTCAACATGCAAATCTGGCAAAACGATATCTTATGACATCCATTACTGGATCGGCTCTGCATCGTCAATAGATGAGCAGGGCGCCGCAGCGATGTACGCCGTCCAGCTGGACGAGTTCCTGGGCTCCACACCGGTGCAGCACCGCGAGGTCCAGCAGCACGAGTCCAGCATGTTCTGCGGATACTTCAAACAGGGCATCATCTATAAGTCAGGTGGAGTGGCTTCAGGGATGAACCATGTGGAGACCAACACTTATAACATCCAGAGACTGCTGCACGTGAAGGGACGCAGGAAAGTGACCGGCACAGAGGTGAGGGA

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008437 lncRNA downstream 10868 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008723 lncRNA downstream 49153 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008722 lncRNA downstream 49164 128158 ~ 129155 (-) False XLOC_003776
TCONS_00007276 lncRNA downstream 106779 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA downstream 106779 61190 ~ 71540 (-) True XLOC_003773
TCONS_00007286 lncRNA upstream 245 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA upstream 1849 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008439 lncRNA upstream 10135 193460 ~ 194715 (-) True XLOC_003781
TCONS_00008725 lncRNA upstream 185802 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007306 lncRNA upstream 299930 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007284 mRNA downstream 13001 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007283 mRNA downstream 13031 161196 ~ 165288 (-) False XLOC_003778
TCONS_00007282 mRNA downstream 36727 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007281 mRNA downstream 50534 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007278 mRNA downstream 75162 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007287 mRNA upstream 37219 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007288 mRNA upstream 77438 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007289 mRNA upstream 82034 265359 ~ 270210 (-) True XLOC_003783
TCONS_00007290 mRNA upstream 92732 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007291 mRNA upstream 92733 276058 ~ 277599 (-) True XLOC_003784
TCONS_00007296 other upstream 165788 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 276490 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 740470 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 886081 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3770398 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

//