RNA id: TCONS_00007281


Basic Information

Item Value
RNA id TCONS_00007281
length 1179
RNA type mRNA
GC content 0.57
exon number 12
gene id XLOC_003775
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 122634 ~ 127785 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGAGTCCCAGGACCAGGCGTGTGTTGAAGGAGGTGCGGACAGAAGACGAGAACAACgtcTGCTTTGAGTGCGGAGCGTTTAACCCGCAGTGGGTCAGTGTGACCTATGGGATCTGGATCTGTCTGGAATGCTCCGGCAAACACAGAGGCCTCGGTGTCCACCTCAGTTTCGTCCGCTCCGTCTCCATGGACAAGTGGAAGGACCTGGAGCTGGAGAAGATGAAGGCGGGAGGAAACAGGAAGTTCCGCATGTTCCTGGAGCTGCAGGACGACTACGACCCCAACTGGAGCCTGCAGGAGAAATACAACAGCAGAGCAGCGGCGCTCTTCAGGGACAAGgtgGCGACTCTGGCTGATGGGAAAGAGTGGAGCATGGAGGACTCTTCTGCCAGAAACTGGACTCCTCCACAGGCCAAGAGCAGCCTGAGCTCCACACACAgGTCCAGTGCAGCTGCAGGTCAGAACCACACTCACTCTGACCGAGCCTTCGAGGACTGGCTGAGCGACGACGTCAACTCTTACCAGAAtgccgGGGCGTCTGGAGCGCAGGAGAATCGCTATGTGGGCTTCGGAAACACTCCTAACCCGCCCAAGAAAGAGGAAGACTTCATCAATAACGCCATGACCTCCATCTACTCGGGCTGGAGCAACTTCACTGTCGGAGCCAGCAAGATTGCCTCCATCGCTAAAgacaatTCGTCATTCTCACAATCCTCTGCGGTGGTTAAAGCTGCTGAGTTGGGTCCGACGCTGAATGATAATGTCATCAAACCCACACAGGAGAAGgtgaagGAGGGCCGCTTGCTGGATGAGATGGCGGTGGGGATCTCAGGTCTGGCTGTGAAGGTTCAGGGTGCAGGAGCTAAAGGCTGGAAGGACATGACCTCTTTCTTCAGTGGGAAACCAGACGGCGCTGATGAGGGCAGCTCTGCTTATGAGGAAGGTTATCAGAGTCAGGATGCGTTCGGCGCTCCGGCACCCAAGCGGGACTTCTGGGAAACGTTCGGCAGTAACTCGGCTCTCAGCGGGAACACCGAGGCTCCGGCCGAACACAAACCCAGCACTGGAGACGGCTGGGATGCCTGGGACAACAACTGGGAGACGTCTGGAGGAGCGCAGAACCAGAACCAGAAGCCCAAACCACAGGAGGAGTCCTGGGACAACAGCGGCTGGTAG

Function

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041114-130 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ARFGAP1 (ADP ribosylation factor GTPase activating protein 1).

Ensembl:

ensembl_id ENSDART00000162658

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007276 lncRNA downstream 51094 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA downstream 51094 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008721 lncRNA downstream 65871 52872 ~ 56763 (-) True XLOC_003772
TCONS_00008720 lncRNA downstream 69078 52872 ~ 53556 (-) False XLOC_003772
TCONS_00008722 lncRNA upstream 373 128158 ~ 129155 (-) False XLOC_003776
TCONS_00008723 lncRNA upstream 470 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008437 lncRNA upstream 35150 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008438 lncRNA upstream 50534 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007286 lncRNA upstream 55785 183570 ~ 190461 (-) False XLOC_003780
TCONS_00007278 mRNA downstream 19477 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007280 mRNA downstream 19498 102605 ~ 103136 (-) True XLOC_003774
TCONS_00007279 mRNA downstream 20876 99257 ~ 101758 (-) False XLOC_003774
TCONS_00007277 mRNA downstream 24817 88247 ~ 97817 (-) False XLOC_003774
TCONS_00007274 mRNA downstream 67410 32007 ~ 55224 (-) False XLOC_003772
TCONS_00007282 mRNA upstream 7464 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007283 mRNA upstream 33411 161196 ~ 165288 (-) False XLOC_003778
TCONS_00007284 mRNA upstream 33411 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007285 mRNA upstream 41609 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007287 mRNA upstream 92759 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007296 other upstream 221328 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 332030 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 796010 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 941621 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3825938 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04916382_04926437.mRNA False 806 mRNA 0.56 6 CI01000057 4916382 ~ 4926437 (-)