RNA id: TCONS_00007284


Basic Information

Item Value
RNA id TCONS_00007284
length 741
RNA type mRNA
GC content 0.54
exon number 9
gene id XLOC_003778
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 161196 ~ 167451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGATTCTGTGATCAGTGAAGAAGTGCAAAATGAACGTGTTTGATCGCAACATAAACTTCGACGCTCTCTTTAAATTCTCTCAGATctcgcGCTCCACTCAGCAGCACCTGAAGAATGTCTATGCCAGTCTGGCGGTGTGTATGCTGGTGGCCACGGCCGGCTCCTACATCTACGTCGTCACCAGAATCTTCCagGGTGGTCTGACCATGCTGGGCTCTCTGGCCATGATGGCGTGGCTGGCCATGACGCCTCACAGCCCACAGACAGAGAAGAAGAGGCTGGCCATCCTGGCGGCGTTCGCCTTcttcacagGTCTGGGACTCGGGCCGCTCATGGACTACGCCATCAGCATTGACCCCAGcatcaTCGTGACTGCGTTCCTGGGCACCTCCATCATCTTCAGCTGCTTCACCCTCAGTGCGCTCTACGCTCAGCGCAGGAGCTACCTGTTCCTtggagGAACTCTGATGACGGGTCTAACGGTCCTGCTGCTCGTCTCCATCCTCAACATGTTCTTCGGCTCCGTCCTCATCTTCAAGGCTCATCTGTATCTGGGTCTGCTGGTCATGTGTGGCTTTGTGCTGTTCGACACTCAGCTCATCATAGAGAAGGCAGAGATGGGGGACAAAGACTACAtctgGCATTGTGTGGATCTGTTTTTGGACTTTGTGACCATCTTCAGAAAGCTGGTGATCCTGCTGTCCATGAACGAGAAGgaaaagaagaaggagaagaagtGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko05130 Pathogenic Escherichia coli infection

ZFIN:

id description
ZDB-GENE-030826-10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM6 (transmembrane BAX inhibitor motif containing 6).

Ensembl:

ensembl_id ENSDART00000173151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008723 lncRNA downstream 32030 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008722 lncRNA downstream 32041 128158 ~ 129155 (-) False XLOC_003776
TCONS_00007276 lncRNA downstream 89656 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA downstream 89656 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008721 lncRNA downstream 104433 52872 ~ 56763 (-) True XLOC_003772
TCONS_00008438 lncRNA upstream 13001 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007286 lncRNA upstream 18252 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA upstream 19856 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008439 lncRNA upstream 28142 193460 ~ 194715 (-) True XLOC_003781
TCONS_00008725 lncRNA upstream 203809 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007282 mRNA downstream 19604 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007281 mRNA downstream 33411 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007278 mRNA downstream 58039 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007285 mRNA upstream 4076 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007287 mRNA upstream 55226 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007288 mRNA upstream 95445 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007289 mRNA upstream 100041 265359 ~ 270210 (-) True XLOC_003783
TCONS_00007290 mRNA upstream 110739 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007296 other upstream 183795 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 294497 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 758477 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 904088 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3788405 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_00522824_00529929.mRNA True 2310 mRNA 0.38 11 CI01000057 522358 ~ 530573 (+)
mexican tetra (Astyanax mexicanus) TU260431 True 1550 lncRNA 0.43 10 NC_035918.1 22190854 ~ 22205690 (+)