RNA id: CI01000057_00522824_00529929.mRNA


Basic Information

Item Value
RNA id CI01000057_00522824_00529929.mRNA
length 2310
RNA type mRNA
GC content 0.38
exon number 11
gene id CI01000057_00522824_00529929
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 522358 ~ 530573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATAAGCTCCAACAACTTTTAAAATATTCAATAATATTTTCTAAAATATTGCAACTCTACAATTTTAAACCTAAATTATTTTTAATTATTTTATTATTAATTATTTTTAATTATTACAATGTTGTTGTGAAATGGCGAAACTATGTAAAAAATAATAAAGCAAACAGATTTATAATCTTTAATTTACATAACACAATGCTTGTGGAGCCCCTTAATTAAAACTTTTATGTGTTTTCTTTATTTTATTTTTTTTTTTTTCCTTTTTAAAATTTGTTGTAGGCTACAACTTGTTTAACATGCCTGATGTTTCAATTAAAAAATAAATTGACATTTCCTACAAGGTTAGTTCAGGTTGTAAAATTCCTTGCGACCCCCAAAAACTTAATATTTATGAATTAATAATTAATGATATATGCTTGCAAAACAAATAAACAAACAAATCATTAAATAAAACTTAAAAATAATGCATAATACATGTTTCAAGGTGTTAGTCAACATCATTGCACTCTGGTCCAGTAGTTGGCGAGGTTTCTCCAAAGTGAGAAAAAGCGAAGAACAGCATGCGCGTGGCGTCATCACGTCGGTGACGTCGCGTTGTTTTGCAAGCGCTGTACGTGACAGGGAGGCGTTGAGACCAAATCCACAGGCCCTCAGCAACAGACGACGGGAAGAGACACACTTTCACATCTTATGGAAACGGTTTAATGCGATTTTCTGTCGAGCACGACCTGACTTCACTCGCTGTTCGTTTAAAGTAACGTTACACAGTCGGCTCTGTGTTTATTACACGGAAGCTCATATGTGGGTTAAACTGATGACCGGACTTTTATTCGGGTCACTTCAGGGTAAAAACACCTCCAAAAAGTACATAATGTTTCGCAGTGAACTTTCAAAATTACATAATTTCCTGCAAGCCTTTCATAGTGACAAGAGTTCAGCTGATAGTTCATCAGGGATCATTCCAGTGTTTTCCACAGGTCTGGATTATACTTGTGGTGTTCAAGACTGCTCTCGCTCGACTCAGCAGCACCTGAAGAATGTCTACGCCAGTCTGGCAGTGTGTATGCTGGTGGCGACTGCCGGCTCCTACATCTATGTCATCACAAGACTGTTTCCGGGTGGGCTCACCATGATTGGGTCACTGGCTATGATGGGTTGGCTTGCCATGACCCCTCACAGCCCTCAGACGGAGAAGAAGAGGTTGGCCATCCTGGCTGCTTTTGCTTTCTTCACAGGTCTTGGACTTGGCCCGCTTATTGACTATGTCATCAGCATCAACCCAAGTATCATCGTGACTGCCTTCCTGGGCACCTCTGTCATCTTCGGCTGCTTCACGTTGAGCGCGCTTTATGCCCAGCGCAGAAGTTATCTCTTCTTGGGAGGCACTCTGATGTCTGGCCTGACTGTTCTTCTGCTCGTCTCCTTCCTCAACATGTTCTTTGCCTCAGAGCTAATCTTTAAGGCTCACGTGTATCTGGGTCTGGCCATCATGTGTGGCTTTGTGCTGTTTGACACTCAGCTAATTATTGAGAAGGCAGAAATGGGAGACAAAGATTACATTTGGCATTGTGTCGACCTCTTCCTGGACTTTGTGACCATCTTCAGAAAGCTTGTGATCATCCTTTCTATGAATGAGAAGGAAAAGAAGAAGGAGAAGAAGTAATTTTCAAAAGAGTGAAAACATCTGTGAGCTGAACACATGTCAGCAGCTTCATTGTGAATCTGATTACATAGTTTGATTACATTTTATGTGATTTGATATGGTGTCTTAACTTTATTTTTGAAAATTGTTACTGGGCTTTGAGTATGTTGTCAGGATAGTGACCTAATGTTGTTTGACTGTAGATTTTGAAGTCTTATTTAAAGCTTAAGTTGATCTTTAATTTCTTTGACTTACTGCAGAATTTAAAAGTCTGTAGAAAAGGAGTTTCATAGGAGTCTCATAAAACATTTGAAATGAGTATCTGATTTAATATTGTACATACAATAGAAAGTTTGAGTGTAATTGAGTTGTTACTGCTAGATAACAGAAGACTTTCTTACCCCACACTCTGAACAATATCAAATCATATATCATAAATACCTTAACATCGTTGTGCTCCGCTAAACTGCTTTTTTGTGGTTATTGCGTTAATATTTCATTGATTTTCTTTTTCTTCTTTGTTGCCAATGTCAGACTAGATTTTTGTAGCTGCTGTTAATGCCAATTTTATTTAGATTCAAGGCTACCATTGTTAATGCATTTTTCATTGAGTTCACAGATGAGATTTATTTTATTCATGAATATTGTGCATATTGATTAAGTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276265 lncRNA upstream 25032 496744 ~ 497326 (+) True G243434
TU276350 lncRNA upstream 37605 484468 ~ 484753 (+) True CI01000057_00485167_00494040
TU276349 lncRNA upstream 37895 484179 ~ 484463 (+) False CI01000057_00485167_00494040
TU276329 lncRNA upstream 62493 458421 ~ 459865 (+) True CI01000057_00457954_00458159
TU276331 lncRNA upstream 95277 426237 ~ 427081 (+) False CI01000057_00422727_00428274
TU276365 lncRNA downstream 32239 562812 ~ 563039 (+) True G243509
TU276370 lncRNA downstream 39957 570530 ~ 570908 (+) True G243514
TU276237 lncRNA downstream 338341 868914 ~ 869972 (+) True G243406
TU276243 lncRNA downstream 349933 880506 ~ 887593 (+) True G243412
TU276263 lncRNA downstream 364822 895395 ~ 898119 (+) True G243432
CI01000057_00501025_00517941.mRNA mRNA upstream 4367 500868 ~ 517991 (+) True CI01000057_00501025_00517941
CI01000057_00485167_00494040.mRNA mRNA upstream 27793 484167 ~ 494565 (+) False CI01000057_00485167_00494040
CI01000057_00457954_00458159.mRNA mRNA upstream 63544 457954 ~ 458814 (+) False CI01000057_00457954_00458159
CI01000057_00452440_00452721.mRNA mRNA upstream 69193 452363 ~ 453165 (+) False CI01000057_00452440_00452721
CI01000057_00435808_00442819.mRNA mRNA upstream 79520 435296 ~ 442838 (+) True CI01000057_00435808_00442819
CI01000057_00579799_00588289.mRNA mRNA downstream 49226 579799 ~ 588713 (+) True CI01000057_00579799_00588289
CI01000057_00603519_00620072.mRNA mRNA downstream 72873 603446 ~ 620122 (+) True CI01000057_00603519_00620072
CI01000057_00631558_00652724.mRNA mRNA downstream 99958 630531 ~ 652734 (+) True CI01000057_00631558_00652724
CI01000057_00704214_00707893.mRNA mRNA downstream 173556 704129 ~ 707903 (+) True CI01000057_00704214_00707893
CI01000057_00713870_00835798.mRNA mRNA downstream 183250 713823 ~ 836026 (+) True CI01000057_00713870_00835798
TU276323 other upstream 101848 420156 ~ 420510 (+) True G243476
TU276419 other downstream 424270 954843 ~ 955195 (+) True G243557
TU276421 other downstream 425490 956063 ~ 958371 (+) True G243558
TU276844 other downstream 1864025 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276911 other downstream 2045880 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 2045897 2576470 ~ 2576852 (+) True G243975

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007284 False 741 mRNA 0.54 9 NC_007122.7 161196 ~ 165318 (-)
mexican tetra (Astyanax mexicanus) TU260431 True 1550 lncRNA 0.43 10 NC_035918.1 22190854 ~ 22205690 (+)