RNA id: CI01000057_00457954_00458159.mRNA



Basic Information


Item Value
RNA id CI01000057_00457954_00458159.mRNA
length 861
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000057_00457954_00458159
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 457954 ~ 459865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAGATGAGACTGCTGAAGCTCTTCCAGAAGCTGCAGACATCATGTGATCAGAACAGGAGGGAAAATGTCCTGCCTTGGCTGAGCCGCCCAGACCAGAACACCTTCAGCGAAGAGATGAAGGTCAACAAGAGCGCCATCTGGAGGCCTTACAGCAACCAGCAGCACATACTGAACATCTACACTAGACTCAGTGGACTCGTTTAAGTTTCTCTTTTTGAGAAAAAGTGTTCCAGAGTTCCAGTTTGAAAGAGATATTTGTACTGCAAAGTGCTCTGATGATTCAATCTTCTATGAAGACTTCATACTTATACTGACGTCTATATTAGACAACATTGACTTTTACATTAAATGCATCTTGATGAGATGTGAAGGAAACCTTCCCTTTATTATTTTAAAGGACATTTATAATCTGATAGCATACTCAAGCTTCGTTCTATAAGCTGATAAAGAGTCAACTTACACAGTACATGTTATATGAAATGTTATAATTTCTTGATATTAATGTGATGACAAGAATTTAGCTCCATTTTAATTATGTTCGGTTTATATGAAGTGGCTCAAATTGGGATGATCTTCATAGAGACTTTATGATTTATATTTTATCTCTTTTTTTTGATGGGAATATATACTGACATCTATATTAGACAACATTGACTTACATTAGATACATCTTCATCTTTGTCTTCCATGAAGCCACAAGTTGCAATATGATGCAAATGTACTTAACATTCTTTTATAAAGAAATGCAGTCATACCTGAACCATGTTCTGTTCTAAGTTCCTGTGTGATTTGGAGAATTCTTCAAATCAAATGTTGTGATACATTATCACTAAATGAATGCAGATATCAGTCACTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU276333 lncRNA upstream 3951 420836 ~ 420958 (+) True G243477
TU276326 lncRNA upstream 30873 420836 ~ 420958 (+) True G243477
TU276331 lncRNA upstream 30873 426237 ~ 427081 (+) False CI01000057_00422727_00428274
TU276328 lncRNA upstream 36014 420836 ~ 421940 (+) False G243477
TU276246 lncRNA upstream 53285 400191 ~ 404669 (+) True G243415
TU276349 lncRNA downstream 25365 484179 ~ 484463 (+) False CI01000057_00485167_00494040
TU276350 lncRNA downstream 25654 484468 ~ 484753 (+) True CI01000057_00485167_00494040
TU276265 lncRNA downstream 37930 496744 ~ 497326 (+) True G243434
TU276365 lncRNA downstream 103998 562812 ~ 563039 (+) True G243509
TU276370 lncRNA downstream 111716 570530 ~ 570908 (+) True G243514
CI01000057_00452440_00452721.mRNA mRNA upstream 4789 452363 ~ 453165 (+) False CI01000057_00452440_00452721
CI01000057_00435808_00442819.mRNA mRNA upstream 15116 435296 ~ 442838 (+) True CI01000057_00435808_00442819
CI01000057_00422727_00428274.mRNA mRNA upstream 29673 422438 ~ 428281 (+) False CI01000057_00422727_00428274
CI01000057_00417827_00418207.mRNA mRNA upstream 39299 417700 ~ 418655 (+) False CI01000057_00417827_00418207
CI01000057_00415376_00415786.mRNA mRNA upstream 42016 415376 ~ 415938 (+) True CI01000057_00415376_00415786
CI01000057_00485167_00494040.mRNA mRNA downstream 25353 484167 ~ 494565 (+) False CI01000057_00485167_00494040
CI01000057_00501025_00517941.mRNA mRNA downstream 42054 500868 ~ 517991 (+) True CI01000057_00501025_00517941
CI01000057_00522824_00529929.mRNA mRNA downstream 63544 522358 ~ 530573 (+) True CI01000057_00522824_00529929
CI01000057_00579799_00588289.mRNA mRNA downstream 120985 579799 ~ 588713 (+) True CI01000057_00579799_00588289
CI01000057_00603519_00620072.mRNA mRNA downstream 144632 603446 ~ 620122 (+) True CI01000057_00603519_00620072
TU276323 other upstream 37444 420156 ~ 420510 (+) True G243476
TU276419 other downstream 496029 954843 ~ 955195 (+) True G243557
TU276421 other downstream 497249 956063 ~ 958371 (+) True G243558
TU276844 other downstream 1935784 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276911 other downstream 2117639 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 2117656 2576470 ~ 2576852 (+) True G243975

Expression Profile