RNA id: TU276323



Basic Information


Item Value
RNA id TU276323
length 355
RNA type TUCP
GC content 0.44
exon number 1
gene id G243476
representative True

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 420156 ~ 420510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGTTTTGCAACTGAAGAAGCGATCTCAGAGGAAAGCTTCAGATACTTAATCTCTTGAGCACTAAGCAACTCAACATCAGCATCAAATATGCCTGCCTACATGGACATCACCCCTCAAGACAACGCTCACTATGCCAGATGCAAACTGTACAGCTTGGAGAGAAAATGTTTCAGCAAAGTAGAGAAACTGAAATCTTCCTTCGAAGACCACCTCCATCATGGTATTCCTGCATCCGACATTTTGGAGAAGACCGTGTCCTTCTTCAGCTCGAAAAAGGCCTTAATCTTCCCCAGCGGCTACTCCAGGTGTTCTCGCGAACTTCTGCGTCTTTCTCCCTCTCCAGAAAAGGACGTGACGCCATTGTTCTGAAGTGAACGTCCATCACAGACTGACCTGTTTATGCAGTGGCATTACCTTTATATGATAGACATTTTTTGCATCATCATCATCCAGTCCGGCCGTTTCCCTCCAGATGGTTGGTGACGTCAGGAAGAACACAGAGTCTTCAGCGTCACTAATGCTCCATTCAGGACTCTGGATGCTTTTGTGCTCCATTGATGTGAAGAAGAGAGTCAGTGTGGGAACCTCACATGAGATCTACTCACACTGACCAGCACAAACACACACACATCTGCTTCATCTGGAGTCCAACATGAGTGTGACGTCACTGCAGCAATGAGAATGATGAAGATCATATAAATTATAATATGATTTATGAATTAGAAAATGTTAAGTCCTATATCTAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU276246 lncRNA upstream 13070 400191 ~ 404669 (+) True G243415
TU276242 lncRNA upstream 217061 194141 ~ 200678 (+) True G243411
TU276256 lncRNA upstream 224023 191457 ~ 193716 (+) True G243425
TU276253 lncRNA upstream 255631 94117 ~ 162108 (+) True G243422
TU276326 lncRNA downstream 326 420836 ~ 420958 (+) True G243477
TU276328 lncRNA downstream 326 420836 ~ 421940 (+) False G243477
TU276332 lncRNA downstream 326 420836 ~ 420958 (+) False G243477
TU276333 lncRNA downstream 326 420836 ~ 420958 (+) True G243477
TU276327 lncRNA downstream 5727 458421 ~ 459865 (+) True CI01000057_00457954_00458159
CI01000057_00415376_00415786.mRNA mRNA upstream 1801 415376 ~ 415938 (+) True CI01000057_00415376_00415786
CI01000057_00413724_00414032.mRNA mRNA upstream 3450 413614 ~ 414289 (+) True CI01000057_00413724_00414032
CI01000057_00407250_00407817.mRNA mRNA upstream 9523 407170 ~ 408216 (+) True CI01000057_00407250_00407817
CI01000057_00388747_00398161.mRNA mRNA upstream 18920 388306 ~ 398819 (+) True CI01000057_00388747_00398161
CI01000057_00346063_00377661.mRNA mRNA upstream 39339 345320 ~ 378400 (+) True CI01000057_00346063_00377661
CI01000057_00422727_00428274.mRNA mRNA downstream 1928 422438 ~ 428281 (+) False CI01000057_00422727_00428274
CI01000057_00435808_00442819.mRNA mRNA downstream 14786 435296 ~ 442838 (+) True CI01000057_00435808_00442819
CI01000057_00452440_00452721.mRNA mRNA downstream 31853 452363 ~ 453165 (+) False CI01000057_00452440_00452721
CI01000057_00457954_00458159.mRNA mRNA downstream 37444 457954 ~ 458814 (+) False CI01000057_00457954_00458159
CI01000057_00485167_00494040.mRNA mRNA downstream 63657 484167 ~ 494565 (+) False CI01000057_00485167_00494040
TU276419 other downstream 534333 954843 ~ 955195 (+) True G243557
TU276421 other downstream 535553 956063 ~ 958371 (+) True G243558
TU276844 other downstream 1974088 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276911 other downstream 2155943 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 2155960 2576470 ~ 2576852 (+) True G243975

Expression Profile