Gene
RNA
| Item | Value |
|---|---|
| gene id | G243558 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 956063 ~ 958371 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU276421 | True | 1339 | TUCP | 0.41 | 2 | 956063 | 958371 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_00900531_00930709 | RBMS2A, RBMS2B, RBMS2 | coding | upstream | 24615 | 899354 ~ 931448 (+) |
| CI01000057_00852993_00854987 | NA | coding | upstream | 100894 | 852993 ~ 855169 (+) |
| CI01000057_00713870_00835798 | LRP1 | coding | upstream | 120037 | 713823 ~ 836026 (+) |
| CI01000057_00704214_00707893 | NA | coding | upstream | 248160 | 704129 ~ 707903 (+) |
| CI01000057_00631558_00652724 | NA | coding | upstream | 303329 | 630531 ~ 652734 (+) |
| CI01000057_01058821_01071240 | RARGB, RARGA, RARG | coding | downstream | 99165 | 1057536 ~ 1071388 (+) |
| CI01000057_01115280_01118124 | NA | coding | downstream | 156909 | 1115280 ~ 1118309 (+) |
| CI01000057_01131299_01132358 | NA | coding | downstream | 171040 | 1129411 ~ 1134228 (+) |
| CI01000057_01139343_01141069 | HOXC11B | coding | downstream | 180668 | 1139039 ~ 1141438 (+) |
| CI01000057_01165517_01166589 | HOXC6BA, HOXC6B, HOXC6 | coding | downstream | 206808 | 1165179 ~ 1167258 (+) |
| G243432 | NA | non-coding | upstream | 57944 | 895395 ~ 898119 (+) |
| G243412 | NA | non-coding | upstream | 68470 | 880506 ~ 887593 (+) |
| G243406 | NA | non-coding | upstream | 86091 | 868914 ~ 869972 (+) |
| G243514 | NA | non-coding | upstream | 385155 | 570530 ~ 570908 (+) |
| G243509 | NA | non-coding | upstream | 393024 | 562812 ~ 563039 (+) |
| G243565 | NA | non-coding | downstream | 12020 | 970391 ~ 970672 (+) |
| G243574 | NA | non-coding | downstream | 42757 | 1001128 ~ 1001330 (+) |
| G243584 | NA | non-coding | downstream | 128980 | 1087351 ~ 1091656 (+) |
| G243628 | NA | non-coding | downstream | 191488 | 1149859 ~ 1150069 (+) |
| G243557 | NA | other | upstream | 868 | 954843 ~ 955195 (+) |
| CI01000057_00417827_00418207 | NA | other | upstream | 535553 | 417700 ~ 418655 (+) |
| CI01000057_02395285_02396439 | NA | other | downstream | 1436227 | 2394598 ~ 2396561 (+) |
| G243975 | NA | other | downstream | 1618082 | 2576453 ~ 2576852 (+) |
| G243991 | NA | other | downstream | 1676866 | 2635237 ~ 2652560 (+) |
| G245231 | NA | other | downstream | 2128725 | 3087096 ~ 3292562 (+) |
| G245401 | NA | other | downstream | 2579198 | 3537569 ~ 3538442 (+) |
