CI01000057_00417827_00418207


Basic Information

Item Value
gene id CI01000057_00417827_00418207
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 417700 ~ 418655 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00417827_00418207.mRNA
GTATAAAAGTAGGCTAGATTGAGGCTCTTGTGTGGCATTTGGTTTTGCAACTGAAGAAGCGATCTCAGAGGAAAGCTTCAGATACTTAATCTCTTGAGCACTAAGCAACTCAACATCAGCATCAAATATGCCTGCCTACATGGACATCACCCCTCAAGACAACGCTCACTATGCCAGATGCAAACTGTACAGCTTGGAGAGAAAATGTTTCAGCAAAGTAGAGAAACTGAAATCTTCCTTCGAAGACCACCTCCATCATGGTATTCCTGCATCCGACATTTTGGAGAAGACCGTGTCCTTCTTCAGCTCGAAAAAGGCCTTAATCTTCCCCAGCGGCTACTCCAGGTGTTCTCGCGAACTTCTGCGTCTTTCTCCCTCTCCAGAAAAGGACGTGACGCCATTGTTCTGAAGTGAACGTCCATCACAGACTGACCTGCAAATGAAAAGGGTCAAAAAGTCAAGCACTTGATCTGATCTTATGTGTTAGCACATCTACCTCGGAGGAAAATAGCACTTGTTTGCTTGTTCTTTCTGGACTTTTTCCCGCCTAAAGGACTTTGATAAAGTCATTGCAGACTTTGTAAAGGCGAGAATATCATCTCAAGTTGTGCATTGATTGTGATACACATTAGCTTGTGGGAACCATGCATTTTGTGCATTTAGATATAATGTATTTTTCTCTTGAAGAGGAATGTGCTGAATGTTTTTTAGAACCATTTGACCATGCTCTCTTTTGGAGGACATGCATGCAAAAAAGAACTTTATTTCATTTTTAAAGATACAGTGTATCATTTGATTACTTTTGTGATGATTTTTTTAATCAATTGTTTAAAGCTCTCATAATATGTTTCTATAAA
>TU276324
TGGTTTTGCAACTGAAGAAGCGATCTCAGAGGAAAGCTTCAGATACTTAATCTCTTGAGCACTAAGCAACTCAACATCAGCATCAAATATGCCTGCCTACATGGACATCACCCCTCAAGACAACGCTCACTATGCCAGATGCAAACTGTACAGCTTGGAGAGAAAATGTTTCAGCAAAGTAGAGAAACTGAAATCTTCCTTCGAAGACCACCTCCATCATGGTATTCCTGCATCCGACATTTTGGAGAAGACCGTGTCCTTCTTCAGCTCGAAAAAGGCCTTAATCTTCCCCAGCGGCTACTCCAGGTGTTCTCGCGAACTTCTGCGTCTTTCTCCCTCTCCAGAAAAGGACGTGACGCCATTGTTCTGAAGTGAACGTCCATCACAGACTGACCTGCAAATGAAAAGGGTCAAAAAGTCAAGCACTTGATCTGATCTTATGTGTTAGCACATCTACCTCGGAGGAAAATAGCACTTGTTTGCTTGTTCTTTCTGGACTTTTTCCCGCCTAAAGGACTTTGATAAAGTCATTGCAGACTTTGTAAAGGCGAGAATATCATCTCAAGTTGTGCATTGATTGTGATACACATTAGCTTGTGGGAACCATGCATTTTGTGCATTTAGATATAATGTATTTTTCTCTTGAAGAGGAATGTGCTGAATGTTTTTTAGAACCATTTGACCATGCTCTCTTTTGGAGGACATGCATGCAAAAAAGAACTTTATTTCATTTTTAAAGATACAGTGTATCATTTGATTACTTTTGTGATGATTTTTTTAATCAATTGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00417827_00418207.mRNA False 857 mRNA 0.40 2 417700 418655
TU276324 True 794 TUCP 0.40 2 417739 418631

Neighbor

gene id symbol gene type direction distance location
CI01000057_00415376_00415786 NA coding upstream 1762 415376 ~ 415938 (+)
CI01000057_00413724_00414032 NA coding upstream 3411 413614 ~ 414289 (+)
CI01000057_00407250_00407817 NA coding upstream 9484 407170 ~ 408216 (+)
CI01000057_00388747_00398161 ALDH4A1 coding upstream 18881 388306 ~ 398819 (+)
CI01000057_00346063_00377661 IFFO2, IFFO2B coding upstream 39300 345320 ~ 378400 (+)
CI01000057_00422727_00428274 NA coding downstream 3783 422438 ~ 428281 (+)
CI01000057_00435808_00442819 NA coding downstream 16641 435296 ~ 442838 (+)
CI01000057_00452440_00452721 NA coding downstream 33708 452363 ~ 454003 (+)
CI01000057_00457954_00458159 NA coding downstream 39299 457954 ~ 459865 (+)
CI01000057_00485167_00494040 NA coding downstream 65512 484167 ~ 494565 (+)
G243415 NA non-coding upstream 13031 400191 ~ 404669 (+)
G243411 NA non-coding upstream 217022 194141 ~ 200678 (+)
CI01000057_00187004_00188981 NA non-coding upstream 223984 186007 ~ 191434 (+)
G243422 NA non-coding upstream 255592 94117 ~ 162108 (+)
G243477 NA non-coding downstream 2181 420836 ~ 421940 (+)
G243434 NA non-coding downstream 78089 496744 ~ 497326 (+)
G243509 NA non-coding downstream 144157 562812 ~ 563039 (+)
G243514 NA non-coding downstream 151875 570530 ~ 570908 (+)
G243557 NA other downstream 536188 954843 ~ 955195 (+)
G243558 NA other downstream 537408 956063 ~ 958371 (+)
CI01000057_02395285_02396439 NA other downstream 1975943 2394598 ~ 2396561 (+)
G243975 NA other downstream 2157798 2576453 ~ 2576852 (+)
G243991 NA other downstream 2216582 2635237 ~ 2652560 (+)

Expression


Co-expression Network