CI01000057_00485167_00494040


Basic Information

Item Value
gene id CI01000057_00485167_00494040
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 484167 ~ 494565 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00485167_00494040.mRNA
TTATATAGTGCCTTTCTACCACACTTTACAATAGTGCAATGGAAATGTAGAACAATAAAGTAGGAGAGTAAAGTGGAAAATACTGCAGTACACACAGTCATATGATCAAGAATATGCTGATACAGATGTGTGTCCAGTTTCTGAAGCCATTATAATCACTGACGCTGTCTACGCTGATACAGGATACAGATGTGCGTTCAGTTTCTGAAGTCATTACAATCACTGATGCTGTCTACACTGGTACAGCGTACAGATGTGCGTTCAGTTTCTGAAGTCATTATAATCACTGACGCTGTATATGCTGATACAGTATACAGATGTGCGTTCAGTTTCTGACATACTCCTCGAGCTTGAGTCTGTTGACAACAGGACAAATGGAAGAGTGAAAGAATGTTCGTTTTACGTGTCCAGTTTAAACAGCTGGTTTGCGTCTCTGTACATGCTTCAGAAGGATCCCAGTTTCGGAAACAAGTGGATTTTTTATTTTAATGGCGTCCCGGATTGCGTGTTTGTTCTGAGCATTTTGTACTTTTGTCGAGGCACAATCTAATGGAGAGTTCGCAAGATGAAGCAGCAGACTGTATTGGATCTGACAACAGCTGCATCACAAACCGCAAGTAAATGATTTAATAATGCTTTGTCTGTAAATGACTGCTTTATATAGATAATGTTTTTAAATACTGTGTTGATACTGTTTCCTATGCAATGACGATAGCAAATCATAACATTCCTGACAAGCCTTAAAGGAGCCACGCCTTAAAAACGAATCATTTCAGACAGAGGCTCAGAATGAGGGTTGAAAATAATTGTTTTTCCACATACATATTATTATTTATTTATTTTTGTGCAAAGAACCTTATTAACATTATAAGTGAACCTCAAGGAACATATTAAAATGGTTTAGAAAAAATCCATGTCATGACCCCTTTAAGATGGGTGGGTCATCTTACCCCGTCTTATTTATCAAAGTTCTGTGGTATTACATAACGAACGAAACTAGATGGGCGAAATAGACCTGCCCACTCAAGAGTACAAGCCCCGCCCACTGCAATACAGAAGCCACCCGACAACACTGTTTGCTCCGGTAGAAAAACACTTGAAAAACCTCAAAGACGAGAATTTCTCGGACCTTTTCTCCGGAGAGTCCTTACGTGTGGGAAAAATGCATTCGGGTCAGCTTGAGAAAGCGGGTTCGCTGAGGAAACGGACTCTCTCTCGAGGAATGAGCGAAGACGAGTCTCTTCGGCACATTATCAGAGAGGCAGAAGAGACGAACAGACACCTGTCACGCAGTGATAGCAGATACGGATCGTTAAAAAGAGGACAAAGAGAAGAAAGCCAAACGGATGAGGACTGTGCGCAGGAGCTGCGGACGCTCTCGCTCCAGCAGGATGTTCTTATGTTCCAGGTGGGCTGTCTTCAGGATGCGCTCGAGGGGGCGGAGGAGATGCTCGCCGAAACACAGAGAGAGACGCATCAGCTCACCATGGAGCTGGAGCGAGAGAGAGCGATAAGGAAAAAGCTGGAGGACATGCTTGCCTCATTAATGCAGGAGATGGAGAGGTTAAAAGAGGAAAGAAAAGCTGAGCAGCTTCAGGAGAGACACACGGGGCCTGTCAGGATTCAGGGAGCTCCAGAAGGGACTTCAGTGGACCGAGACGAAACACTGCCCTCAGACAGCGGAGGCTCTCCAGTGCATCTGAATGCAGCCCCAGTGTTACATTTGAAAAAATTGGTCAGCCAAGCATTTGGTCAATCAGTGTTTGATAATCAAAGGCATGAAGCTCCGGCTGGAGAGGATAATGATGAGAGCAGTGGCTATGAGGACGCGCCGTCAGAGTTCTCACCCTGTCCGTCCACTCCAGACGTAGATGAAGATGATGGGATGAATACTAGGGAGGCCAGGATTCGTACAAATGAAGATTCTTGTGCTCTCTCTTGAGTAATTTATAGAACGTTTCTGATAAATTTGTCTACTACAGAAGTATGCCACTTTATCCAAGTTACATTCAATGAAACAGCCTTTGCACAACTTTAAAATGAAGACTACTTTGTTTCACTCATCAGTCAACGAAATGATTTAGGTAAAGATGGAATCTGCACTTTATATTAGGTGTCTTTAACTACTATGTACTAACATTTAAATTAATCATTTGATACAATGCACTTATTTTGCAGAGCTTTTTCATGCTCAAACAGCAATATTACACACTAAAGAGAGATGAACATGGAAAAGCATAATAGGACCTTTTTAAAGACACCTAATATAAAGTGTGATCGCATTTTGTTTCTGCTAAATTCCATGTCTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTTTGTTTATATTTTTTTTCTGTTGGACTTTGTACATTTATGTTCATTTTGCTATTAAACATAAGCTGTCAATTTCAAGACACTTGTTAACAAGGCATTATTTTACATTTGTATGTTGGCCCTATTGAAAAA
>TU276349
TTTCTACCACACTTTACAATAGTGCAATGGAAATGTAGAACAATAAAGTAGGAGAGTAAAGTGGAAAATACTGCAGTACACACAGTCATATGATCAAGAATATGCTGATACAGATGTGTGTCCAGTTTCTGAAGCCATTATAATCACTGACGCTGTCTACGCTGATACAGGATACAGATGTGCGTTCAGTTTCTGAAGTCATTACAATCACTGATGCTGTCTACACTGGTACAGCGTACAGATGTGCGTTCAGTTTCTGAAGTCATTATAATCACTGACGCTGTA
>TU276350
CTGATACAGTATACAGATGTGCGTTCAGTTTCTGACATACTCCTCGAGCTTGAGTCTGTTGACAACAGGACAAATGGAAGAGTGAAAGAATGTTCGTTTTACGTGTCCAGTTTAAACAGCTGGTTTGCGTCTCTGTACATGCTTCAGAAGGATCCCAGTTTCGGAAACAAGTGGATTTTTTATTTTAATGGCGTCCCGGATTGCGTGTTTGTTCTGAGCATTTTGTACTTTTGTCGAGGCACAATCTAATGGAGAGTTCGCAAGATGAAGCAGCAGACTGTATTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00485167_00494040.mRNA False 2467 mRNA 0.41 5 484167 494565
TU276349 False 285 lncRNA 0.39 1 484179 484463
TU276350 True 286 lncRNA 0.43 1 484468 484753

Neighbor

gene id symbol gene type direction distance location
CI01000057_00457954_00458159 NA coding upstream 25353 457954 ~ 459865 (+)
CI01000057_00452440_00452721 NA coding upstream 31002 452363 ~ 454003 (+)
CI01000057_00435808_00442819 NA coding upstream 41329 435296 ~ 442838 (+)
CI01000057_00422727_00428274 NA coding upstream 55886 422438 ~ 428281 (+)
CI01000057_00417827_00418207 NA coding upstream 65512 417700 ~ 418655 (+)
CI01000057_00501025_00517941 NA coding downstream 6303 500868 ~ 517991 (+)
CI01000057_00522824_00529929 TMBIM6, TEGT coding downstream 27793 522358 ~ 530573 (+)
CI01000057_00579799_00588289 NA coding downstream 85234 579799 ~ 588713 (+)
CI01000057_00603519_00620072 NA coding downstream 108881 603446 ~ 620122 (+)
CI01000057_00631558_00652724 NA coding downstream 135966 630531 ~ 652734 (+)
G243477 NA non-coding upstream 24302 420836 ~ 421940 (+)
G243415 NA non-coding upstream 79498 400191 ~ 404669 (+)
G243411 NA non-coding upstream 283489 194141 ~ 200678 (+)
CI01000057_00187004_00188981 NA non-coding upstream 290451 186007 ~ 191434 (+)
G243422 NA non-coding upstream 322059 94117 ~ 162108 (+)
G243434 NA non-coding downstream 2179 496744 ~ 497326 (+)
G243509 NA non-coding downstream 68247 562812 ~ 563039 (+)
G243514 NA non-coding downstream 75965 570530 ~ 570908 (+)
G243406 NA non-coding downstream 374349 868914 ~ 869972 (+)
G243412 NA non-coding downstream 385941 880506 ~ 887593 (+)
G243557 NA other downstream 460278 954843 ~ 955195 (+)
G243558 NA other downstream 461498 956063 ~ 958371 (+)
CI01000057_02395285_02396439 NA other downstream 1900033 2394598 ~ 2396561 (+)
G243975 NA other downstream 2081888 2576453 ~ 2576852 (+)
G243991 NA other downstream 2140672 2635237 ~ 2652560 (+)

Expression


Co-expression Network