G243406


Basic Information

Item Value
gene id G243406
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 868914 ~ 869972 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU276237
AGCAAATGGCTGCAATATAACAAAGAGTGAAAAATTTAAGGTGGTCTGAATACTTTCCGTACCCACTGTACAGCCTTGAAATGAGTCCAGTCTCTTTTTATCTTTATTGCACAACCATACCAAAAATACACAAAACTTGTTAAATCACAGGCAATATAATTAGGAGGTGTGCAGACCTGTATTAAATATATAACCTCAACATTTTTTCCTTTTTTGTACATTGTGTTTTTAAAAAAAAAAAAAAAAAAGTTATTTTGTTATTAATATATGTTTTATAAAACGGTTAGTTCCTGTCCTTGATTCTAATTGGTCAATAGCTGTGTTTTATTCATGATAAAACACGGCTATGACTGCTTCACCCAACGGTTCTGTGTATCACTACACAACACTCTTAGCAATGTAAACTGTATGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTATTATGAGAAAGAGATCGATTGAACGAGTTTATTACCTGCATTCAGATTTAGCGTTTTCCTTTAGGTCAGTCCTATGTTCATAATAAAAAATCTGTTTAAATGTCCAATGTATTATCCTGTCCTTTTAACAGTTAAGGGGTTCTGACAGTGCTAGTCAAAGCATTTGTCAGTTGCATCTTGTTCCATGTTCACAACAATTCAGTCTTTTCAATATAAAAGTCTTCATTACTGACTGACACACTCATAAAGACAGTATTTGCCGCCATCTAATGGAGTAATAATGTAACTTCTGTTGCTGTTCACGGTTGGACTATTTTTTTTCGGCGGAAGGAAGGCTTCAGTGAAAGTTTACTTCATGGAAGTTGCATTGATAAATTTTTTTGGCTTTAATATTTGTATTGTGTGGTAACCGTGTTATAAAAGCAATAAGGTACTCGAGGCTAGTGCTGTATCGTGAATAAGTCACGGCTGAAGGGGTTGCAGGAACTCCACTTCACGTCATGCCTAACAACACCCTTTAGCCATGACTTACCTCTTGTACCTTATTGCTTACATATAGCCTATTTCAAAACATGTTTGGAAAATGATATGAACTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU276237 True 1059 lncRNA 0.34 1 868914 869972

Neighbor

gene id symbol gene type direction distance location
CI01000057_00852993_00854987 NA coding upstream 13745 852993 ~ 855169 (+)
CI01000057_00713870_00835798 LRP1 coding upstream 32888 713823 ~ 836026 (+)
CI01000057_00704214_00707893 NA coding upstream 161011 704129 ~ 707903 (+)
CI01000057_00631558_00652724 NA coding upstream 216180 630531 ~ 652734 (+)
CI01000057_00603519_00620072 NA coding upstream 248792 603446 ~ 620122 (+)
CI01000057_00900531_00930709 RBMS2A, RBMS2B, RBMS2 coding downstream 29382 899354 ~ 931448 (+)
CI01000057_01058821_01071240 RARGB, RARGA, RARG coding downstream 187564 1057536 ~ 1071388 (+)
CI01000057_01115280_01118124 NA coding downstream 245308 1115280 ~ 1118309 (+)
CI01000057_01131299_01132358 NA coding downstream 259439 1129411 ~ 1134228 (+)
CI01000057_01139343_01141069 HOXC11B coding downstream 269067 1139039 ~ 1141438 (+)
G243514 NA non-coding upstream 298006 570530 ~ 570908 (+)
G243509 NA non-coding upstream 305875 562812 ~ 563039 (+)
G243434 NA non-coding upstream 371588 496744 ~ 497326 (+)
CI01000057_00485167_00494040 NA non-coding upstream 384161 484167 ~ 494565 (+)
G243477 NA non-coding upstream 409049 420836 ~ 421940 (+)
G243412 NA non-coding downstream 10534 880506 ~ 887593 (+)
G243432 NA non-coding downstream 25423 895395 ~ 898119 (+)
G243565 NA non-coding downstream 100419 970391 ~ 970672 (+)
G243574 NA non-coding downstream 131156 1001128 ~ 1001330 (+)
G243584 NA non-coding downstream 217379 1087351 ~ 1091656 (+)
CI01000057_00417827_00418207 NA other upstream 448404 417700 ~ 418655 (+)
G243557 NA other downstream 84871 954843 ~ 955195 (+)
G243558 NA other downstream 86091 956063 ~ 958371 (+)
CI01000057_02395285_02396439 NA other downstream 1524626 2394598 ~ 2396561 (+)
G243975 NA other downstream 1706481 2576453 ~ 2576852 (+)
G243991 NA other downstream 1765265 2635237 ~ 2652560 (+)

Expression


Co-expression Network