Gene
RNA
| Item | Value |
|---|---|
| gene id | G243584 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 1087351 ~ 1091656 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU276450 | False | 387 | lncRNA | 0.45 | 2 | 1087351 | 1088439 |
| TU276451 | True | 689 | lncRNA | 0.47 | 4 | 1087351 | 1091656 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_01058821_01071240 | RARGB, RARGA, RARG | coding | upstream | 15963 | 1057536 ~ 1071388 (+) |
| CI01000057_00900531_00930709 | RBMS2A, RBMS2B, RBMS2 | coding | upstream | 155903 | 899354 ~ 931448 (+) |
| CI01000057_00852993_00854987 | NA | coding | upstream | 232182 | 852993 ~ 855169 (+) |
| CI01000057_00713870_00835798 | LRP1 | coding | upstream | 251325 | 713823 ~ 836026 (+) |
| CI01000057_00704214_00707893 | NA | coding | upstream | 379448 | 704129 ~ 707903 (+) |
| CI01000057_01115280_01118124 | NA | coding | downstream | 23624 | 1115280 ~ 1118309 (+) |
| CI01000057_01131299_01132358 | NA | coding | downstream | 37755 | 1129411 ~ 1134228 (+) |
| CI01000057_01139343_01141069 | HOXC11B | coding | downstream | 47383 | 1139039 ~ 1141438 (+) |
| CI01000057_01165517_01166589 | HOXC6BA, HOXC6B, HOXC6 | coding | downstream | 73523 | 1165179 ~ 1167258 (+) |
| CI01000057_01177196_01178597 | NA | coding | downstream | 85337 | 1176993 ~ 1178667 (+) |
| G243574 | NA | non-coding | upstream | 86021 | 1001128 ~ 1001330 (+) |
| G243565 | NA | non-coding | upstream | 116679 | 970391 ~ 970672 (+) |
| G243432 | NA | non-coding | upstream | 189232 | 895395 ~ 898119 (+) |
| G243412 | NA | non-coding | upstream | 199758 | 880506 ~ 887593 (+) |
| G243406 | NA | non-coding | upstream | 217379 | 868914 ~ 869972 (+) |
| G243628 | NA | non-coding | downstream | 58203 | 1149859 ~ 1150069 (+) |
| G243605 | NA | non-coding | downstream | 69105 | 1160761 ~ 1164870 (+) |
| G243645 | NA | non-coding | downstream | 115178 | 1206834 ~ 1207053 (+) |
| G243618 | NA | non-coding | downstream | 116582 | 1208238 ~ 1210427 (+) |
| G243558 | NA | other | upstream | 128980 | 956063 ~ 958371 (+) |
| G243557 | NA | other | upstream | 132156 | 954843 ~ 955195 (+) |
| CI01000057_00417827_00418207 | NA | other | upstream | 666841 | 417700 ~ 418655 (+) |
| CI01000057_02395285_02396439 | NA | other | downstream | 1302942 | 2394598 ~ 2396561 (+) |
| G243975 | NA | other | downstream | 1484797 | 2576453 ~ 2576852 (+) |
| G243991 | NA | other | downstream | 1543581 | 2635237 ~ 2652560 (+) |
| G245231 | NA | other | downstream | 1995440 | 3087096 ~ 3292562 (+) |
| G245401 | NA | other | downstream | 2445913 | 3537569 ~ 3538442 (+) |
