CI01000057_01165517_01166589 (HOXC6BA, HOXC6B, HOXC6)


Basic Information

Item Value
gene id CI01000057_01165517_01166589
gene name HOXC6BA, HOXC6B, HOXC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1165179 ~ 1167258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01165517_01166589.mRNA
CAATATAAGGGGGTGTGCGTGCGTTATGTTCCCTTCCCTACGCTGTTGTAACAGGGCAAAGAAAAGATCATCTTATATTCGTACTTTTATTGTTGCTTCCTGTTTCTTTTATTGGAGTGGTCAGCTGACATTGGCATCTTGTCAATCTTATAGCGAAGATTTGGAAACATTAGGCTGAGTGCACATTCTCTGCTGGGGTTCTGAGATAAATAATAAAGTATTTATAAAAGACTTGAAATAAGATATAGGTTGATAAGGATAAAGAGTGTGTGAGAGAAAAAGAGAGTGTGTAATTTAAGGGAGGAAGTAAGAGGAAAAAGTGGCGTTTAAAGGAAAGAATGAATTCCTATTTTACGAACCCGTCGCTCTCATGCCATTTAAACGGCGGTCAAGAAGTTCTGTCCAATGTTACCCTCAGCTCGACAAACTATGACCCGGTGCGACACTTCTCGCCATATGGGGCAGCCGTGGCCCAAAACCGGATATACTCCAATCCGTTCTATTCGCCACAAGAAAACGTTATGTTCGGGTCAAGCCGAGGACCGTACGAGTACGGATCAAATGTGTTCTACCAGGACAAGGATGTGCTTCCAAGTTGCAGGCAAAGCATTGGGCAAACACAGGGTTCATTGACCCAGGATTACGCTTCAGACCAAGGCAAGACTGCGTCTCAGGAACCGAAAGGAAGTATTCAAATATATCCGTGGATGCAGAGGATGAACTCGCACAGTGGAGTTGGCTATGGGTCCGACAGACGGCGAGGTCGCCAAATCTATTCGCGATACCAAACTTTAGAACTAGAGAAAGAATTCCATTATAATCGTTATTTGACAAGACGCAGAAGAATCGAAATCGCCAATGCGTTGTGTCTGTCGGAACGCCAGATTAAAATTTGGTTTCAGAACCGCCGGATGAAGTGGAAGAAGGAGAGCAATCTCACACCCAGCATCAATGACAGTGGCTCGGTAGGAGCTGGCCAGGACACGGACAAAGAAGAAGCAGAGGAAGCATCAGAAAAAAAGGAGCATAACTGACGGTCTTAGCACCTTATTAAAGGGTCTACAGCATTCAGTGTGAAATAATGTTCTACTACATGATAATTAAGCTACCTGTCGAACTTTCATAATTTGCACAATTTATTAACACCAAAATCTGTTACATTTCAATTAAATGCGAAACGTGTTTTGCCTCTCCATTTACTCTTTCCCCAAAATTGTGGAAACCTGTTTATTTCTAGAAATGACGTTCCTAGAATTGGACGATGGCTATTATGGATCAAAGAAAGCAACCACTGGACAGACAGCTGCAGTCTTTATCTTCAGTGTATATTGTTGGGATATACTAATATCGTTTGGATATCTTGGATGTTGGAAAGTTTATAGGTATAAGGGACTGTGATGCAGACTTTGACCAAACACATTGCGGAATTTCCAAATAGGCTACAATCATTTTTTAATCATTCATTATCGTGTATTATCATAAACTGTAAAATCGACAATAGCAAGTACATTGTAAATGTTTGTAAATATATGAGATTCAACTAATTTTGATGAGCATTTGTGTAGCTTTCCTTAAAATTTTCTGTGTTGTGCTTTTCTTTACTTTGCGTTCTGTAAGAACTATATGGTGTAAAAAGTAATTTGGAATATTAGCTAACAAGCGATATGGATACAATGTTTGAAAACCACGTAAATTAATATTAA

Function

symbol description
hoxc6b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including margin; musculature system; neuroectoderm; paraxial mesoderm; and tail bud. Orthologous to human HOXC6 (homeobox C6).
hoxc6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cytosol and nucleoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09306 HOX_6; homeobox protein HoxA/B/C6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01165517_01166589.mRNA True 1703 mRNA 0.40 2 1165179 1167258

Neighbor

gene id symbol gene type direction distance location
CI01000057_01139343_01141069 HOXC11B coding upstream 23741 1139039 ~ 1141438 (+)
CI01000057_01131299_01132358 NA coding upstream 30951 1129411 ~ 1134228 (+)
CI01000057_01115280_01118124 NA coding upstream 46870 1115280 ~ 1118309 (+)
CI01000057_01058821_01071240 RARGB, RARGA, RARG coding upstream 93791 1057536 ~ 1071388 (+)
CI01000057_00900531_00930709 RBMS2A, RBMS2B, RBMS2 coding upstream 233731 899354 ~ 931448 (+)
CI01000057_01177196_01178597 NA coding downstream 9735 1176993 ~ 1178667 (+)
CI01000057_01361967_01364527 NA coding downstream 194632 1361890 ~ 1365466 (+)
CI01000057_01379483_01380217 NA coding downstream 211062 1378320 ~ 1380253 (+)
CI01000057_01382893_01387090 NA coding downstream 215491 1382749 ~ 1387130 (+)
CI01000057_01403147_01424851 NA coding downstream 235889 1403147 ~ 1425333 (+)
G243605 NA non-coding upstream 309 1160761 ~ 1164870 (+)
G243628 NA non-coding upstream 15110 1149859 ~ 1150069 (+)
G243584 NA non-coding upstream 73523 1087351 ~ 1091656 (+)
G243574 NA non-coding upstream 163849 1001128 ~ 1001330 (+)
G243645 NA non-coding downstream 39576 1206834 ~ 1207053 (+)
G243618 NA non-coding downstream 40980 1208238 ~ 1210427 (+)
G243615 NA non-coding downstream 49444 1216702 ~ 1221552 (+)
G243656 NA non-coding downstream 115223 1282481 ~ 1283909 (+)
G243657 NA non-coding downstream 116868 1284126 ~ 1285779 (+)
G243558 NA other upstream 206808 956063 ~ 958371 (+)
G243557 NA other upstream 209984 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 744669 417700 ~ 418655 (+)
CI01000057_02395285_02396439 NA other downstream 1227340 2394598 ~ 2396561 (+)
G243975 NA other downstream 1409195 2576453 ~ 2576852 (+)
G243991 NA other downstream 1467979 2635237 ~ 2652560 (+)
G245231 NA other downstream 1919838 3087096 ~ 3292562 (+)
G245401 NA other downstream 2370311 3537569 ~ 3538442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location