G243991


Basic Information

Item Value
gene id G243991
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2635237 ~ 2652560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU276930
TTTTTTTTTTTTTTTTTTTGTCCGGTTTTAAACACCTTGTTTATTTACGGACTGAAAATGTTTCACCAGCAAATTGTGTCACATTTACCCTTGCCATACAAAAATCAATCTCATTCATGTCATTCACTTTGGAACTGAAGTACATCATTTACAAAAAAAAAAAAAAAATTATACAAAAATGTGAGAAATAAAAAGCCAATAAAAAAAAATTGAAAACATGAGAATATCAGTGTCAACCATTTCAGCACCTGATGTTCCAGACTTGTGTTTTAGGATGGGGGTAGATCATTTTCTCTCTCCCCCCCCTTTTTTTTTTTTTGGAAACAGTAAGTGCAATGTTTTTCAGGTGAGATTACTATAAGGGGTTGTGGAACTAATTTAAATTCAAACCCGACTGCAAAAACTGCAAATGAATATGAAAAGGAAGCAGTTTGGTGGACTGTGATAATGAAGACTGCATCTGACATTCAGCAACTTTAAAACAAACAAACAAAAAAAATTCTGCATCCAAGAACACACACACACAAAACCCTCTTCCACAATCACACACACATATTCAGCAACACAAAACAACATGCACATCCTGCAAAAATCAGTTTCATTTCCCATAAAGGCACCAACATGATGTTCACAGAATGATACATATTGTATGTGAGTGTACACTGTTGATCTGCCAGTCCGTGTGACTGTTTCGAGGACGGTGGCTGTTTCATGGCCCGGCTGATGACTGGACATCTGATGTTCGATTTACAAGGCGTCCAGAAGGCTGTCGATGCGGCTGACCAGCTCTTGCCTTTTGCCTGCCAGGGTTTTATCCGAGTCGATGTAGGCATCCTTCTTCACCTTTCCGGCCACCAGCCGCTCAGCTTCCTGACAGGATCGGCACACCAGATCCTTCAGCTGGCCGTCCAGCTTCTGTATCTCACCAACTTTTCAGCCAGGTCGGAGCCTTCTGCTTTGAGACGGGCTTGTAAAGCAGTGATGTCACTGGTGAGGGTGCGGTGTTCGGCCTCCAGGGTCTTTCGGCCGCTGTTTAGTGCTCCGGTATCCCGGGATTGCTTGTAGCGGTTCACAACTTCATCCATGTGGCGGTACAGACCTAGGCGCTTGTTGACCAGAGTCAAGACCTGCTCAGTGATGGAGGCCACCTTCATACGCACCTCTGCTGCTGGATCCTAGCAAAAGAAATGAGGAAACA
>TU276931
TTTTTTTTTTTTTTTTTTTGTCCGGTTTTAAACACCTTGTTTATTTACGGACTGAAAATGTTTCACCAGCAAATTGTGTCACATTTACCCTTGCCATACAAAAATCAATCTCATTCATGTCATTCACTTTGGAACTGAAGTACATCATTTACAAAAAAAAAAAAAAAATTATACAAAAATGTGAGAAATAAAAAGCCAATAAAAAAAAATTGAAAACATGAGAATATCAGTGTCAACCATTTCAGCACCTGATGTTCCAGACTTGTGTTTTAGGATGGGGGTAGATCATTTTCTCTCTCCCCCCCCTTTTTTTTTTTTTGGAAACAGTAAGTGCAATGTTTTTCAGGTGAGATTACTATAAGGGGTTGTGGAACTAATTTAAATTCAAACCCGACTGCAAAAACTGCAAATGAATATGAAAAGGAAGCAGTTTGGTGGACTGTGATAATGAAGACTGCATCTGACATTCAGCAACTTTAAAACAAACAAACAAAAAAAATTCTGCATCCAAGAACACACACACACAAAACCCTCTTCCACAATCACACACACATATTCAGCAACACAAAACAACATGCACATCCTGCAAAAATCAGTTTCATTTCCCATAAAGGCACCAACATGATGTTCACAGAATGATACATATTGTATGTGAGTGTACACTGTTGATCTGCCAGTCCGTGTGACTGTTTCGAGGACGGTGGCTGTTTCATGGCCCGGCTGATGACTGGACATCTGATGTTCGATTTACAAGGCGTCCAGAAGGCTGTCGATGCGGCTGACCAGCTCTTGCCTTTTGCCTGCCAGGGTTTTATCCGAGTCGATGTAGGCATCCTTCTTCACCTTTCCGGCCACCAGCCGCTCAGCTTCCTGACAGGATCGGCACACCAGATCCTTCAGCTGGCCGTCCAGCTTCTGTATCTCACCAACCTTTTTCAGCCAGGTCGGAGCCTTCTGCTTTGAGACGGGCTTGTAAAGCAGTGATGTCACTGGTGAGGGTGCGGTGTTCGGCCTCCAGGGTCTTTCGGCCGCTGTTTAGTGCTCCGGTATCCCGGGATTGCTTGTAGCGGTTCACAACTTCATCCATGTGGCGGTACAGACCTAGGCGCTTGTTGACCAGAGTCAAGACCTGCTCAGTGATGGAGGCCACCTTCATACGCACCTCTGCTGCTGGATCCTAGCAAAAGAAATGAGGAAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU276930 False 1198 TUCP 0.43 3 2635237 2652560
TU276931 True 1200 lncRNA 0.43 3 2635237 2652560

Neighbor

gene id symbol gene type direction distance location
CI01000057_02618561_02619733 GATA2A, GATA2 coding upstream 15466 2618420 ~ 2619771 (+)
CI01000057_02548444_02558549 NA coding upstream 75545 2547895 ~ 2559692 (+)
CI01000057_02416295_02420310 CDA coding upstream 214695 2416295 ~ 2420542 (+)
CI01000057_02412538_02415631 NA coding upstream 219304 2411516 ~ 2415933 (+)
CI01000057_02395285_02396439 NA coding upstream 238676 2394598 ~ 2396561 (+)
CI01000057_02693930_02700711 GNL3 coding downstream 41370 2693930 ~ 2700711 (+)
CI01000057_02707814_02708251 NA coding downstream 55254 2707814 ~ 2708374 (+)
CI01000057_02758170_02782493 CAMK1A, CAMK1.L, CAMK1B, CAMK1 coding downstream 105610 2758170 ~ 2782566 (+)
CI01000057_02794112_02799150 NA coding downstream 141431 2793991 ~ 2799153 (+)
CI01000057_02884788_02888727 NA coding downstream 231521 2884081 ~ 2888805 (+)
G243995 NA non-coding upstream 9325 2622511 ~ 2625912 (+)
G243986 NA non-coding upstream 42866 2592133 ~ 2592371 (+)
G243985 NA non-coding upstream 43468 2591498 ~ 2591769 (+)
G243973 NA non-coding upstream 64439 2570555 ~ 2570798 (+)
G243933 NA non-coding upstream 133328 2501533 ~ 2501909 (+)
G244003 NA non-coding downstream 10468 2663028 ~ 2666310 (+)
G243999 NA non-coding downstream 52357 2704917 ~ 2705443 (+)
G244042 NA non-coding downstream 56005 2708565 ~ 2708955 (+)
G244043 NA non-coding downstream 58013 2710573 ~ 2710781 (+)
G244044 NA non-coding downstream 60494 2713054 ~ 2713474 (+)
G243975 NA other upstream 58385 2576453 ~ 2576852 (+)
G243558 NA other upstream 1676866 956063 ~ 958371 (+)
G243557 NA other upstream 1680042 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 2214727 417700 ~ 418655 (+)
G245231 NA other downstream 434536 3087096 ~ 3292562 (+)
G245401 NA other downstream 885009 3537569 ~ 3538442 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other downstream 1189468 3842028 ~ 3844691 (+)
G245486 NA other downstream 1557337 4209897 ~ 4212081 (+)
G245725 NA other downstream 2446125 5098685 ~ 5103606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003851 rpn1 coding NC_007122.7 CM002895.2 3892386 ~ 3907937 (-)