CI01000057_02758170_02782493 (CAMK1A, CAMK1.L, CAMK1B, CAMK1)


Basic Information

Item Value
gene id CI01000057_02758170_02782493
gene name CAMK1A, CAMK1.L, CAMK1B, CAMK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2758170 ~ 2782566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02758170_02782493.mRNA
AGGGGCTTTCTCTGAGGTGGTGCTCGCAGAGGAGAAGAGGACGAGAAAACTAGTGGCAATTAAGTGCATCCCGAAAAAAGCTCTGGAGGGGAAAGAAAACAGCATAGAAAATGAGATCGCTGTGCTCCACAAGGCGTCCTCAAGGAAAGACATGCTTAGTGACCTTACTGTGCACACCGAAGCGCAGGGCACCCTGGGACAGCTTGAGGGCCTCGCTCATATCTGCTTTGTGTGGGTCGGAGTGGTGTGTAGTTTGGAAGGAGGCAAAGACGAGGCCACCAGAATGCCTGAAAGGAGAGAAGGCGAGAAGGGGAGTGGGATTAAACATGCCAACATAGTTTCCCTGGAGGACATCTATGAGTGTAAATCACACCTCTACCTTGTCATGCAACTGGTGTCCGGTGGCGAACTCTTCGACAGGATTGTGGAAAAAGGATTTTACACTGAGAAAGATGCCAGTAAGCTCATACAGCAGATCCTGGACGCTGTGAAATACCTGCATGACATGGGCATTGTGCACAGAGACCTGAAGCCGGAGAACCTGCTGTACTACAGTATGGACGAAGACTCCAAAATCATGATCAGCGATTTTGGCCTGTCAAAGATTGAGGGTTCGGGTAGTGTGATGAGCACAGCATGTGGCACTCCTGGATATGTAGCTCCTGAGGTTCTGGCACAGAAGCCGTACAGTAAAGCAGTGGACTGCTGGTCAATCGGGGTCATCGCTTACATCCTTTTATGTGGCTATCCGCCATTTTACGATGAGAATGATGCCAAGCTCTTTGAGCAGATCCTGAAGGCAGAGTATGAGTTTGATTCACCATACTGGGATGATATCTCTGACTCAGCCAAAGATTTTATTGTGCATTTAATGGAAAAAGATCCCAACCAGCGTTACACGTGTGAACAGGCTCTTCAGCACCCATGGATCGCTGGAGACACAGCGTTGGATAAGAACATCCATGAATCTGTCAGTGCCCAAATCAAGAAGAACTTTGCCAAAAGCAAGTGGAAGCAAGCATTTAATGCCACAGCTGTAGTTCGTCACATGCGCAGGCTGCAGTTGGGAACCAGTCAGGAGGGCCAAATGCAGTCCACCCTGCCCAGCCCGTGCCACGGACAGCTGCTGCTGCCCGAGGGAGACGAGGAAGAGAGCTCTCTTCGGAGAGAAAATAGTGGCTGTTCTGAGGGTGTCAGTGAAGGGAATGACATCCAGAACTGCACCTACCATGTCCATCCTACTAGCCGGTTGGGACTGTTGAAAGCTGGACACGTTAAAAAAATAGCTGTTTACCGTCAAATTCACCTACAAGGCATATACGGCTATTCTAAGCTATGCACTGTCGGTGGATGCTTTGTAAATGTCTAACATTTAATGCTGCCATTCTGTAAATACTGCAAAGCTTCTTTTTTTTTTTTGTAAACCCCTTTCTATTACAACA

Function

symbol description
camk1b Enables calmodulin-dependent protein kinase activity. Involved in activation of protein kinase activity. Is expressed in female organism. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).
camk1a Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMK1 (calcium/calmodulin dependent protein kinase I).
camk1 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Involved in several processes, including positive regulation of cellular component organization; positive regulation of protein export from nucleus; and positive regulation of protein modification process. Predicted to be located in cytosol. Predicted to be active in glutamatergic synapse and postsynaptic density.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02758170_02782493.mRNA True 1442 mRNA 0.48 13 2758170 2782566

Neighbor

gene id symbol gene type direction distance location
CI01000057_02707814_02708251 NA coding upstream 49796 2707814 ~ 2708374 (+)
CI01000057_02693930_02700711 GNL3 coding upstream 57459 2693930 ~ 2700711 (+)
CI01000057_02618561_02619733 GATA2A, GATA2 coding upstream 138399 2618420 ~ 2619771 (+)
CI01000057_02548444_02558549 NA coding upstream 198478 2547895 ~ 2559692 (+)
CI01000057_02416295_02420310 CDA coding upstream 337628 2416295 ~ 2420542 (+)
CI01000057_02794112_02799150 NA coding downstream 11425 2793991 ~ 2799153 (+)
CI01000057_02884788_02888727 NA coding downstream 101515 2884081 ~ 2888805 (+)
CI01000057_03326630_03330891 NA coding downstream 542153 3324719 ~ 3331089 (+)
CI01000057_03496993_03600733 PTPRG, PTPRGA coding downstream 714427 3496993 ~ 3600733 (+)
CI01000057_03611693_03627832 CSE1L coding downstream 829127 3611693 ~ 3628414 (+)
G244010 NA non-coding upstream 14963 2738357 ~ 2743207 (+)
G244001 NA non-coding upstream 37999 2719924 ~ 2720171 (+)
G244000 NA non-coding upstream 39379 2718541 ~ 2718791 (+)
G244047 NA non-coding upstream 41909 2715459 ~ 2716261 (+)
G244046 NA non-coding upstream 43556 2714326 ~ 2714614 (+)
G244061 NA non-coding downstream 35744 2818310 ~ 2819171 (+)
G244068 NA non-coding downstream 48784 2831350 ~ 2833300 (+)
G244069 NA non-coding downstream 53242 2835808 ~ 2836052 (+)
G244070 NA non-coding downstream 53514 2836080 ~ 2836349 (+)
G245103 NA non-coding downstream 93919 2876485 ~ 2876724 (+)
G243991 NA other upstream 105610 2635237 ~ 2652560 (+)
G243975 NA other upstream 181318 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 361688 2394598 ~ 2396561 (+)
G243558 NA other upstream 1799799 956063 ~ 958371 (+)
G243557 NA other upstream 1802975 954843 ~ 955195 (+)
G245231 NA other downstream 304530 3087096 ~ 3292562 (+)
G245401 NA other downstream 755003 3537569 ~ 3538442 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other downstream 1059462 3842028 ~ 3844691 (+)
G245486 NA other downstream 1427331 4209897 ~ 4212081 (+)
G245725 NA other downstream 2316119 5098685 ~ 5103606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017168 LOC105028385,LOC106583015,LOC100136667 coding CM030122.1 CM030122.1 49301962 ~ 49318919 (-)