CI01000057_03496993_03600733 (PTPRG, PTPRGA)


Basic Information

Item Value
gene id CI01000057_03496993_03600733
gene name PTPRG, PTPRGA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3496993 ~ 3600733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03496993_03600733.mRNA
ACGTACGGACCAGATACAGGGTGGGCGGCAGCTTTTCCTGAGTGTCAGGAGAGAAACCAATCGCCAATCAATATAGCCGACCAAGACACTAAGGTCTCGATGGAGTACCAGGAACTCACGCTGGACGGGTTTGATGCAGAGTCGTCCAACAAGACGTCAATGAAGAATACAGGCAAAACTGTGGCGATCTTCCTGAAGGACGATTATTTTGTGAGAGGAGCCGGGCTACCGGGCCGCTTCAAAGCCGAGAAGGTGGAGTTCCACTGGGGCCAGAGCAATGGTTCAGATGGCTCGGAGCACAGCATCAATGGCAGGAGATTCCCTGTGGAGATGCAGATCTTCATGTATAACTCAGACGACTTTGACAGTCTTAACACAGCCATACGGGAGAAGCGAGTAATTGCGGCCATGGCTGTCTTCTTTCAGGTGGGAATGAAGGACAATCCAGCAGTAGATCCGATCATTCATGGTCTAAGAGGAGTGGTGCATCACGAGAAAGAGACATTTCTAGAGCCCTTTGTGCTCCGAGACCTGTTGCCGTCTTCAATCGGGAGCTACTACCGTTACATCGGCTCTTTGACCACCCCGCCCTGCAGTAAAGTGGTGGAGTGGATCGTCTTCAGTCGGCCTGTGTTCCTCTCCTACAAACAGCTGGAGGCGTTCTACTCCATCTTCACCACAGAACAGCAGGATCATGTTAAATCCGTGGAATACCTGCGTAACAACTTCCGCCCACTCCAGAGTCTGGACAACCGAGAGGTCTTCAAATCCGCAGTCAAAGATGCTTGGCTGCCTGACTTGACTGACAGCCTGGGGAACCCGTACGGCACAGAGGCTTCCAAAGCATGCAGCAGCGCCCCGATCAACATGAACGTCCAGCACACGAACAAGACTGCATTAGTCGTCCGATGGTCCCGTCCGGAGATCACCTACGATCCGCCCATCATCAGCTACCTCATTTCCTACAGCTGGACCAGAAACGATGAGTCATACGAGGAGACGTACGTCAAAGGAAGTGATCAGAAACTGGAGGCTGTCATCACGCCAGTGTCACCGGATGTGCTGTACCTGTTCCGCGTCCAGGCAGTGTGTTTGAATGACAAGCGCAGTGACTTCAGCCAGAGCATGCTCTTCAGAGCCAACACCACCAGGATATTTGAGGGCACAAGAATAGTCAAAACTGGGATGCCAACTGTCTCCCCAGCATCCTCAGCAGACATGGCGCCAATCAGCTCCGGTTCCTCCACCTGGACTTCCTCTGGTCTTCCGTTCTCTTTCGTTTCAATGGCAACTGGGATCGGCCCCTCTTCCAGCGGCAGCCAAGCGACAGTAGCGTCCGTGGTGACCAGCACCCTCCTGGCAGGGCTGGGTTTCAGTGGAGGGGTCATCTCCTCCTTCCCCAGTTCGATCTGGCCCACCAGGCCTCCGCCCTCGACCTCTGCCTCTGCCTCCACCCGCCAGACCCCAGCCAAACCTATGGGTAAAGACAGCAGAGTTCCAGACAATGTCGAAAAGCAGACGAACAGCTCCGTGACGAAAGACCCGCCCACAGCAGCGCCAGATTCGACAGCCAAAGAGAAAGGGGGAAGTAGGAAGGCAGAAAACAGCACAGAGCCATCTAGTGTCCCGGAGGATGACGTGGAGAAAAACACACACAGAATAGAGGAAGAGGACACGCAGGTGCTGCCGACTGCAGAGCCAGAGGATGATGATAATGTGACGGCAGTAATAGAGCCCCCAGACAGCATGGCTCAGACCAGCAAACCCAGCAGAGGAGACCGCAACCACCTGCCACCTTTCTCTATACATACAGAGCGTACTCTAGTCTCCAGCATGCACCCTGTGCCTGGTTCAGGAAGGATGGAGTGGATTATTCCTCTGGTGGTGGTGTCAGCGCTCACCTTCCTCTGCCTCATTCTGCTGCTGGCCGTCCTCGTTTACTGGAGGAGGTGTTTCCAAACGGCTCATTTCTACGTTGAGGACAGTAACTCGCCCAGAGTTGTGCCCAATGAGAGCATCCCAGTCATCCCTATCCCAGATGATATGGAGGCCATCCCTGTTAAACAGTTTATCAAGCATGTATCAGAACTCTACTCCAACAACCAACACGGCTTCTCAGAAGAGTTTGAGGAAGTGCAGCGCTGCACAGCAGATATGAAGATCACATCAGAACACTCCAATCATCCTGACAACAAGCACAAAAACAGATACATCAACATCATAGCCTACGACCACAGTCGAGTGAAGCTCAGGCCTCTGGCAGGCAAAGACTCCAAACACAGTGACTACATCAATGCCAACTATGTGGATGGCTACAACAAACCCAAGGCCTACATAGCAGCTCAGGGTCCTCTCAAATCCACATTCGAGGACTTCTGGAGGATGGTGTGGGAACAGAACACCGGCATTATAGTCATGATCACTAACCTGGTGGAGAAAGGCAGAAGAAAATGCGACCAGTACTGGCCGACAGAGAACAATGAGGAATATGGTAATATTGTGGTGACGCTAAAGAGAACCAAAGTAATGGCGTGCTACACACTCCGCATCTTCACTATCAGAAACACCAAAGTAAAGAAGGGTCAGAAGGGTAACACTAAGGGCCGTCAGAGTGAGAGAACAGTTCTGCAGTATCACTACACTCAGTGGCCGGATATGGGTGTCCCTGAGTACACGTTACCTGTGCTCACCTTCGTTAGGAAGTCCTCTGCCGCACAGACTCCAGAGATGGGCCCGATGCTTGTACACTGCAGTGCTGGTGTGGGCAGGACCGGAACTTACATTGTGATTGACAGCATGCTACAGCAGCTGAAGGATAAAGGCTCAGTCAATGTGCTGGGTTTCCTCAAACATATACGAACTCAGAGAAACTACCTGGTCCAAACGGAGGAGCAGTATATCTTCATCCACGATGCCTTGATGGAAGCCATTCTTGGGAAGGAAACAGAGGTGCCCTCCAGTCAGCTGCACAGTTACGTCAACAACATCCTGACGCCGGGCCCAGGGGGCAAAACACGACTAGAGAAGCAGTTCAAGTTGGTGACTCAGTGCAATGCAAGATTTGTGGAGTGCTTCAGTGCTCAGAAAGAATGCAACAAGGAGAAGAACCGCAACTCTTCTGTTGTCCCATCGGAAAGAGCACGTGTTGGTCTTGCACCATTGCCTGGAATGAAAGGCACTGATTACATCAATGCGTCTTATATAATGGGCTACTACCGGAGCAATGAGTTCATCATTACCCAGCATCCCCTGCCTCACACCACTAAAGATTTCTGGAGGATGATCTGGGACCACAACGCTCAAATCATCGTCATGTTACCAGACAACCAGGGCCTGGCGGAGGATGAGTTTGTGTATTGGCCGAGTCGAGAGGAAGCCATGAACTGTGAGGCGTTTACAGTCACCCTTATCAGTAAAGACAGACTCTGTCTCTCCAATGAGGAGCAAATCATCATTCATGACTTCATCCTGGAGGCCACACAGGATGATTATGTTTTAGAAGTTCGTCATTTTCAGTGCCCAAAATGGCCAAACCCTGACGCTCCCATTAGCAGCACCTTTGAGCTCATCAATGTCATCAAAGAAGAGGCCATGACCAGAGATGGACCCACTATAGTGCATGATGAGTTTGGTGCAGTGTCTGCTGGGATGTTATGTGCTCTCACCACACTGTCACAGCAGCTGGAGAGTGAAGGAGCTGTGGGGGTCTATCAGGTGGCCAAAATGATCAACCTCATGAGACCTGGAGTCTTTACCGACATTGAACAGTACCAGTACCTTTACAAAGCTATGCTCAGCCTGATAAGCACGAAAGAGAACGGATCAAGCCCCATGTCCTTGGACAGAAACGGCAGTATGGCCATGTCTGACGAATCGGACCCGGCTGAAAGCATGGAGTCCCTCGTC

Function

symbol description
ptprga Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G).
ptprg Enables identical protein binding activity and protein tyrosine phosphatase activity. Involved in negative regulation of epithelial cell migration. Located in extracellular exosome.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K16667 PTPRG; receptor-type tyrosine-protein phosphatase gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03496993_03600733.mRNA True 3906 mRNA 0.52 28 3496993 3600733

Neighbor

gene id symbol gene type direction distance location
CI01000057_03326630_03330891 NA coding upstream 165904 3324719 ~ 3331089 (+)
CI01000057_02884788_02888727 NA coding upstream 608188 2884081 ~ 2888805 (+)
CI01000057_02794112_02799150 NA coding upstream 697840 2793991 ~ 2799153 (+)
CI01000057_02758170_02782493 CAMK1A, CAMK1.L, CAMK1B, CAMK1 coding upstream 714427 2758170 ~ 2782566 (+)
CI01000057_02707814_02708251 NA coding upstream 788619 2707814 ~ 2708374 (+)
CI01000057_03611693_03627832 CSE1L coding downstream 10960 3611693 ~ 3628414 (+)
CI01000057_03636623_03639946 NA coding downstream 35890 3636623 ~ 3640129 (+)
CI01000057_03652858_03668897 NA coding downstream 52073 3652806 ~ 3669092 (+)
CI01000057_03669937_03677055 SLC35E1 coding downstream 68677 3669410 ~ 3677881 (+)
CI01000057_03692584_03701758 NA coding downstream 91851 3692584 ~ 3702032 (+)
G245360 NA non-coding upstream 144397 3337261 ~ 3352596 (+)
G245389 NA non-coding upstream 169823 3326786 ~ 3327170 (+)
G245199 NA non-coding upstream 412622 3013131 ~ 3084371 (+)
G245200 NA non-coding upstream 455939 3018556 ~ 3041054 (+)
G245196 NA non-coding upstream 489069 3007677 ~ 3007924 (+)
G245428 NA non-coding downstream 82421 3683154 ~ 3683354 (+)
G245358 NA non-coding downstream 105624 3706357 ~ 3706854 (+)
G245349 NA non-coding downstream 107095 3707828 ~ 3708448 (+)
G245430 NA non-coding downstream 163578 3764311 ~ 3764625 (+)
G245357 NA non-coding downstream 214900 3815633 ~ 3816359 (+)
G245231 NA other upstream 204431 3087096 ~ 3292562 (+)
G243991 NA other upstream 844433 2635237 ~ 2652560 (+)
G243975 NA other upstream 920141 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 1100511 2394598 ~ 2396561 (+)
G243558 NA other upstream 2538622 956063 ~ 958371 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other downstream 241295 3842028 ~ 3844691 (+)
G245486 NA other downstream 609164 4209897 ~ 4212081 (+)
G245725 NA other downstream 1497952 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1973171 5564489 ~ 5579843 (+)
G245856 NA other downstream 2036921 5637654 ~ 5643340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003174 ptprga coding NC_007122.7 CM002895.2 4953964 ~ 5463254 (+)