CI01000057_05564489_05579041


Basic Information

Item Value
gene id CI01000057_05564489_05579041
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5564489 ~ 5579843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05564489_05579041.mRNA
ATCTCAATGCCAACATTCCCTGTGGTGGTGAAGATTGGACATGCCCATTCCGGAATGGGGAAGGTGAAAGTGGACAATCACAGTGACTTCCAGGATATAGCGAGTGTTGTGGCCATCACTCAAACCTACACAACCACAGAGCCTTTCATTGACGCGAAATATGACATCAGAGTCCAGAAGATCGGCTCTGATTACAAAGCTTACATGAGAACTTCAATCTCTGGCAACTGGAAATCAAACACCGGCTCTGCCATGCTGGAGCAAGTAGCCATGACTGACAAATATAAGCTGTGGGTGGACGCCTGCGCCGATGTCTTCGGAGGTCTAGACATCTGTGCTGTTAAAGCCATACATGGAAAGGACGGGAAGGATTATATCACTGAGAGCGCTGCCTTAAAAGAAAGCCTGACTGACCCCAACAAGACCCTCGGCCAGCGGCCCCCTCCACAAGGGGGGACAGTGAAACCCCAAGAACCACAGCCTAAGAGTCAAGAGCCTACACCCGAGCCAGTCCCTGCCCAGGAACCTGTGCCCAAAGCAGGCCCTGCCCCGACTCTACCACCCACCACGCAGCAGCCCAAACCCCAGGCTCAAGCAGCACCTGAACCCACTCCAGGGAAGCCAACAGAACTGCCCCCAAAACCCCTACCCCCCAAACCCCTTCCCCCAAAGCCTGTGCCCCCAGTTCGGAGGAACTCCAAGCCTCAGATCCAGCCGAAGCCCCAAACCCCACCTCCCACCAAGGCCCACCCAAAAGCCCAACCGGGTGACGCAGATCAGAGTCCTGGTCAATCCCGGCCAGATCCGGTCCCTGTTCAAGAGCAATCCCCAGCCAAGGTTCCAATTAAACCCCTGTCACCAGCTAAACCCCAGCTCCAGCCTAAACCGGTGCTCAGAGAGCAAGCCAAACCTGAGGGCCGAGCCCAGACTTCTGCTCCATCTGAAGCACCCTCAGCCCCAGTTAGAGCAACTCCTTCCCCTGCTCCTGCTCCTGCTCCTGCTCCCACCCAATCCCAGCCTCCTGTGGAGGAACAGCCTGCACCCCAGCAGAAGTCAACCCATCCTCTCTTGAACAAATCCCAGTCCTTGACCAATGCCTTCAACGCCTTTGGCGAGACCTTCCGTTCCAGCAACGAGGACGAAGCCAAGGCGGAGACCATCCGAAACTTGCGAAAGTCTTTTGCCAGCCTGTTCTCTGACTAACAACACAATGGGTGACAAAGGGTGGCAAGGGACTCGACTGACAGATATGCATCCTGGTCTGAGGTTAACTCCATGTAGCTGTGTACATTTAACCCCTCCTCCCAACTCTGCTGTAATTATCCGAGTGTTACTTAAGAAGGTTAGAGTGATGTACAGTGATTGTTGGTGTTTACATTTTTGAGACGCTCTGCCCTGAAACACTGGGATTTATACGAGGAGGGGATGGCTCTAAAGCGATCAGTTACAGGAGGCCAGAGAATGCTGAAGTCGTCTATAACCCCTCGATGTTGTAGCTGTATTGGTGTAGTGTGTTTTCTTTGCCCGGAGACAAATATTTGTGACTAGTTCCCCTCGTTTATCCCCTGTAGTGTGTGTGCGTGTAACTAGTTGATGTGTTGTAAGCATTAGCCAGTAAGACATTAGTTCGACAATACCTCGGGATCTTTATAAAAGCACTTTCCTATTCAAGTTTCCTACAATAATCAATGCTTGGACTGGTCGGTTTCAACGCAGTGGTGGGATTTCAGTGGAACGCCTGGTGTTTTAGCGACATAGCTTGCATCCAGCACTTATCAACCTGTCAAGATATTCATGAGTGCCATGTTTATAGTATCTCTGCATATTGTATTGTACTGTATGTTTAACATCTCAGGAGTTTAATTTGAATATATGTTTATTCCGGCGTCACACTGTTCATGTTGTGTTTTCTTTGTGCACAGTGATGATGCTTTGCATGACCGGTGATAATTGTTTTCTCTGTACAAGTGTCA
>TU279053
CATTTCTTTGTGTGTGTCCACAGAGCGCTGCCTTAAAAGAAAGCCTGACTGACCCCAACAAGACCCTCGGCCAGCGGCCCCCTCCACAAGGGGGGACAGTGAAACCCCAAGAACCACAGCCTAAGAGTCAAGAGCCTACACCCGAGCCAGTCCCTGCCCAGGAACCTGTGCCCAAAGCAGGCCCTGCCCCGACTCTACCACCCACCACGCAGCAGCCCAAACCCCAGGCTCAAGCAGCACCTGAACCCACTCCAGGGAAGCCAACAGAACTGCCCCCAAAACCCCTACCCCCCAAACCCCTTCCCCCAAAGCCTGTGCCCCCAGTTCGGAGGAACTCCAAGCCTCAGATCCAGCCGAAGCCCCAAACCCCACCTCCCACCAAGGCCCACCCAAAAGCCCAACCGGGTGACGCAGATCAGAGTCCTGGTCAATCCCGGCCAGATCCGGTCCCTGTTCAAGAGCAATCCCCAGCCAAGGTTCCAATTAAACCCCTGTCACCAGCTAAACCCCAGCTCCAGCCTAAACCGGTGCTCAGAGAGCAAGCCAAACCTGAGGGCCGAGCCCAGACTTCTGCTCCATCTGAAGCACCCTCAGCCCCAGTTAGAGCAACTCCTTCCCCTGCTCCTGCTCCTGCTCCTGCTCCCACCCAATCCCAGCCTCCTGTGGAGGAACAGCCTGCACCCCAGCAGAAGTCAACCCATCCTCTCTTGAACAAATCCCAGTCCTTGACCAATGCCTTCAACGCCTTTGGCGAGACCTTCCGTTCCAGCAACGAGGACGAAGCCAAGGCGGAGACCATCCGAAACTTGCGAAAGTCTTTTGCCAGCCTGTTCTCTGACTAACAACACAATGGGTGACAAAGGGTGGCAAGGGACTCGACTGACAGATATGCATCCTGGTCTGAGGTTAACTCCATGTAGCTGTGTACATTTAACCCCTCCTCCCAACTCTGCTGTAATTATCCGAGTGTTACTTAAGAAGGTTAGAGTGATGTACAGTGATTGTTGGTGTTTACATTTTTGAGACGCTCTGCCCTGAAACACTGGGATTTATACGAGGAGGGGATGGCTCTAAAGCGATCAGTTACAGGAGGCCAGAGAATGCTGAAGTCGTCTATAACCCCTCGATGTTGTAGCTGTATTGGTGTAGTGTGTTTTCTTTGCCCGGAGACAAATATTTGTGACTAGTTCCCCTCGTTTATCCCCTGTAGTGTGTGTGCGTGTAACTAGTTGATGTGTTGTAAGCATTAGCCAGTAAGACATTAGTTCGACAATACCTCGGGATCTTTATAAAAGCACTTTCCTATTCAAGTTTCCTACAATAATCAATGCTTGGACTGGTCGGTTTCAACGCAGTGGTGGGATTTCAGTGGAACGCCTGGTGTTTTAGCGACATAGCTTGCATCCAGCACTTATCAACCTGTCAAGATATTCATGAGTGCCATGTTTATAGTATCTCTGCATATTGTATTGTACTGTATGTTTAACATCTCAGGAGTTTAATTTGAATATATGTTTATTCCGGCGTCACACTGTTCATGTTGTGTTTTCTTTGTGCACAGTGATGATGCTTTGCATGACCGGTGATAATTGTTTTCTCTGTACAAGTGTCAATAAACATGTGGCGCATCATTCCACTGACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05564489_05579041.mRNA False 1973 mRNA 0.51 7 5564489 5579811
TU279053 True 1644 TUCP 0.51 3 5573904 5579843

Neighbor

gene id symbol gene type direction distance location
CI01000057_05535136_05545646 NA coding upstream 17810 5533651 ~ 5547218 (+)
CI01000057_05503547_05504435 NA coding upstream 59960 5502755 ~ 5504529 (+)
CI01000057_05357955_05399136 ATG7 coding upstream 165237 5356907 ~ 5399252 (+)
CI01000057_05349185_05350825 HRH1 coding upstream 213431 5348216 ~ 5351058 (+)
CI01000057_05291346_05295377 NA coding upstream 268760 5289434 ~ 5295729 (+)
CI01000057_05596837_05615278 PPARG coding downstream 17026 5596837 ~ 5616010 (+)
CI01000057_05626464_05631670 NA coding downstream 46653 5626464 ~ 5631801 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding downstream 84227 5664038 ~ 5668165 (+)
CI01000057_05678941_05683978 ALAS1 coding downstream 99130 5678941 ~ 5684022 (+)
CI01000057_05700512_05711609 POC1A.L, POC1A coding downstream 120701 5700512 ~ 5711753 (+)
G245838 NA non-coding upstream 10872 5548919 ~ 5553617 (+)
G245843 NA non-coding upstream 41420 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 80078 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 80527 5483734 ~ 5483962 (+)
G245878 NA non-coding downstream 243917 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 248371 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 257797 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 366641 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 372982 5952793 ~ 5961077 (+)
G245725 NA other upstream 460883 5098685 ~ 5103606 (+)
G245486 NA other upstream 1352408 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 1719798 3842028 ~ 3844691 (+)
G245401 NA other upstream 2026047 3537569 ~ 3538442 (+)
G245231 NA other upstream 2271927 3087096 ~ 3292562 (+)
G245856 NA other downstream 57843 5637654 ~ 5643340 (+)
G245857 NA other downstream 75465 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 332002 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003801 syn2b coding NC_007122.7 CM002895.2 675296 ~ 762721 (-)