G245883


Basic Information

Item Value
gene id G245883
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5952793 ~ 5961077 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU279109
CCCATCATGCACCATGGGAAATGACCTCTTATTTCCCGGTTAGGAGGGTGTATTGAGGGCACATTCCAAGACAGCAAACAATTCTTGCCTGGCCCCCCGTGTGAAAGGATAAGACGTACCTTTGTGAAGTAATGAGAGAATGTATTCTAGCCTGAGGCCAGAAGGCATTAATTTTACATTTGAGCCGCAAGTTTCAAATTAGCTCAGCAGAATAATCTCAACATTCTCTAGTTTAATGTTTGTTGCTCACAGTTGAGCTCCATATGGAACAAACAATAATACAACTCACGGATATAAAAACAGAAAAGGTTTTAATTTAATAATAAACAGAGAATCTCTACAGGACTTTTTGCACAAATGTGAGCCGTGAAAAGTGAGAACAGGCACAATCCATTTCAGTTAATGCATTTTATCAGCATCTTTGACTCAAAGTTTTTTGACTCAAAAAAAAAAAAAAAAAAAGACTAAAAGCTTTGAATAAATAAAGGATGGTTTATCTTGTAATGGTTTGAAATATAATATAATATTGTCATTTTATTTCAATTTGGAGAATGTATTGTAAAATGTTTGGTTAGTGTAATAAATATATAATCTATTGCATATACTCTGTATCTCAGACAGTTATTCATATGTTGTATATTATTGTGGCATTTAAAATGGACATCTTGTGGTTAGTCATGAAATACATGGTTTCTTTTATGCTCTGAGAGAGCCAGGAATTTTCCTTTTGTCTATTCGTTAATTATTTATACTCACAAGGACACTTAATACACGTATCAAATTATGAAAGACCATATTAAATACAAACATATTTTTTAGAATAAGCCAATGTTGCAATGAAGAGTTTTCTGTACAGTACATTTTATTTTAAATATATTGTTCAAGACATATTTTAAGAAAGTCATTTACCATTACATGATGGCGATTGGTCTAAAAAGTTTATTTATCCTGCATTAAAATGCTTATTCAACCCCACCATACATGTCTGATTTGGAAGTCAGGTTGTAGTGGCAAGTCAAATTCAGACCATCACAGACATTTCACTTAAATGCATATGACACACATGGTCACGTTGAGAGTGGTGGTCAGTGCATTGCTTCTTCTTTAGCTTAGGTGCTGTTATGTAATGCTTTCACAATCACAGCGTAAATACTCCCTAAAACATTCTGTTCCTTCACTCAGCTCTTTAATTCTCCCTCTCCGTAATGGAATTCTGATGGCCTTTCTTTTGGACAGACATGAACCTTTTCTCTGAGGTGATTCTCCAGGTGTTGGGACAGAAGAATGAAGAGGCAGTCCAACAGATGTGTGAATATCAGTTTAGCTGTGCTCCAATGGATGATCATGTTGATCTGCCCCTACTGAAGGAGAACAATGGAAAAGAAAACAAAGTATTGATGGGATAGCGAAAGCTGGTGTAAGTTATTTTCAATTCTATTAATGAAAAGAGTTACATTGTATGCGCCTAAAGTTTGAAGTTATTTAGATAAAGACACAAATAATTGTACTATATTACTACATAATCTATATGAATCAACACATCCCATTCAGATACACATTAGACACAAAACCCAGGCTTAAAGGAAAAATGTGCCTGTGGTGACATTTCTGCTAAATGATATTACGTTATTTCTTGCACATTTCGTAACACTTTCAAAGTGACATGTCCAATGAGTGGCACTAAAAGCATGTTTAGTTTCATCTGAAACAGACGAATGTGAATCTGGCAATGTTATTATGTTGGTAGTTATATTGTGGCAGTTTGGAAATGAATGGCACTAAAAGGTTAACGCTCTATTACATTTTTTTGAAAATAACGCACAACCAGGGGCATTTCCTCCGAGGAGGTAAGGGAGACAGTGCCTCCTCAAAAAATTGGATGAGAAAAAAATCCATATTACAAACATAAATCAATGCAAATATTACAAAATGTGACATTAAAAAGCATAAAAGTCACCGGTAAAGGTATAGCAGGAGTGCCTCTTCTGAGCCCATTGAGTTTTAACAGACCCCCTAAAGCCTGCGCTGGGTTTAGTGGGGGGTAATTGAGAATAAATGGGGGAAAGTCACGTGAGAAGAGGCAATGCCTCCATCGTGCTATGATTAGATATGATCAGTTATGATTGGATATGATTGGTTTGTGCGATAAATCCTGCCTCTTATTTTCATTTGCGTTTCGAATCAGCCTGAATGGTCAGCGTCAATGGAAGTATTAATTAAAATGTAAGTAAACAGCTTAGAGTAAGTAAGCCACTTAGATATCACCACTTTATGTCACGTCAAAATCAAACTTGAAATGGCCTGAAAACATGATGACTGTGGGGGTTTTAGTGAGCAGTCAGCTTGGTGAAATTAAAGGTACATCTTCATATCTGTGATCAGTGTTTATTGAGCTTGATGACTGATGATCCAAAAATATTAACAGCTGAACATTTGTTTACAAATAAAATATATTGTTTAAATGGTTACTGCCTTTAGTTATAATGGAGTAAAAATATATACAAAACACTAAATTAATGAGATTTATACTTGGTTTTAAAAAATAGAACATTAATTACATACTTAATGTAAAAATACAAAATGGAATTGTAAGTTTTCGGTATTTTACTGCCTCTACTCTTCATTTCAACTGAAAACTGCAGTGAATTATATGTAAAGCTTTGTTTTGTTTTTTGGAGTTTTGAAAAAAATGTAGGTAGAGGCACATTTTTTCAATGAGCTGTTGGTATTTTAGTGGTTTGAGGGTTTATTATTACCTCTGACTGCAGAAAGTGGTGCACTCTTGGTCGCTGTGTAAAGCACACGCGCAGCGCTGACCTCCTACGCTGCCCTCAGCAGAACGCCGTACCCGCTGGGAGCCTCTATAACTTGACATGCCATATGGGACAGTGCGCTGGTGTGTTGATCCAGATGATGTCCAGGTGACAGTAGTAAACACACTCCTTGTCTTTGTAGGTGTAACATGTGCATCTCTTGGCTCTCCTCCGTGGTTTTAGGAGCTGGCAGAAATAACACGCTCCAGGTTTATTAGCAGAATCACCAAACTGCTTAGGAGTCGCACTTGATACTTTAATTAAATCCTTCGCCTTGTTTTTCACAAGCGCATCTTCACGAAACGAGGAAAAGCCTGAATATGAAAATGCTTTAATTAGAACAATGGCAACTCTATTCATTCAAATGATCTCATGTTGCAGCAGCACTAAAACGTGACGATAAACGCCTTTCTATCTGACCTTTTTTCTATAAATCGTTTTACATTGTCACTTTAAACGTTCGAAATATGTAGCGTTCACCTTAAAAAGAATGTGATAGATGTAATATCCTAAAAAACTGCTTCATGTAAGAATGTATTAAAGTCAAAAATAGGCCTATAATTTCGCCTTATTATGGGTGACATTGAAAGTAGCCTATTTTAAGGGTCAAGCCTTAGTTTATTCAGGGTGCGAACTATGCAGTGAGGCACAGGGTCACAACCCAATAATGAAGGGTTGAACCCTGAAGAAATTCGAAACAAAAGGCTTCAAACTTATATGTAAAGATTTAGTCAGAGCGCGTATTTTCACCTAAACAATATGAGGTAAACAATATGATTCACGCTGTTCGATCACTGCCGTCATTGTGCATCAGGTTTTTGACGTTCCTGTGACAGCGGCGCCAAATTACAATTTGCTTTGCGTCCGAAAATTACGTTTTTTTCACATTTACATTGCATAATTTAGAATATGTTTATTTCTTTAAAAAAACATTCCTTTTAAAATAGTCGGCACCACTGAATGCGCACCACTGAAGTCACCTCGATATAAAACAACTCATATTCATCATCTAACGCCTCAATTATGCGTCTATACAATATAAACTGGCATATTTAAAGTTTTAAAATATAAAGTGTTCTGTGCTTAAAAGTATATGATTTTAGTCAAATAACAGTAGGCTACATACGTTTTCTTCGTGTAAATGCAATGCAATCTAAACCCACCGTTGGCCATTGCGACTGTTAGTCCAATAAAAAGCAAAATTCCCAAATGTATTAATGACACATTGGCCATCCCAGTTATTCCAGATAGTCTCCGTGAAAAAGATCAGTTTAAAATCCAGGATTGACCAGAAGTGCTGAGTGATCCAACTGCAGTTAAAAGTATCATTTTGTTCGTTACTCTTTTATTCCCACGTGGATGCAGCAGTCTGTCATTTGTTTCAGATTTGCGGGGTGCCAGAAGAGCGGAGCGCGACAGAAAAGCATCCTCGGGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU279109 True 4250 lncRNA 0.36 2 5952793 5961077

Neighbor

gene id symbol gene type direction distance location
CI01000057_05933567_05935825 NA coding upstream 16731 5933567 ~ 5936062 (+)
CI01000057_05927908_05930891 NA coding upstream 20948 5927908 ~ 5931845 (+)
CI01000057_05912175_05916639 NA coding upstream 36059 5911767 ~ 5917211 (+)
CI01000057_05884073_05908410 NA coding upstream 44359 5884073 ~ 5908434 (+)
CI01000057_05840771_05841346 NA coding upstream 111281 5840578 ~ 5841512 (+)
G245940 NA non-coding upstream 6104 5946452 ~ 5946689 (+)
G245933 NA non-coding upstream 114956 5837608 ~ 5837837 (+)
G245880 NA non-coding upstream 122385 5828182 ~ 5830408 (+)
G245878 NA non-coding upstream 124953 5823728 ~ 5827840 (+)
G245838 NA non-coding upstream 399176 5548919 ~ 5553617 (+)
G245943 NA non-coding downstream 2213 5963290 ~ 5963512 (+)
G245948 NA non-coding downstream 6787 5967864 ~ 5968226 (+)
G245949 NA non-coding downstream 11888 5972965 ~ 5973209 (+)
G245951 NA non-coding downstream 18872 5979949 ~ 5980235 (+)
G245954 NA non-coding downstream 25783 5986860 ~ 5990017 (+)
G245857 NA other upstream 295554 5655276 ~ 5657239 (+)
G245856 NA other upstream 309453 5637654 ~ 5643340 (+)
CI01000057_05564489_05579041 NA other upstream 372950 5564489 ~ 5579843 (+)
G245725 NA other upstream 849187 5098685 ~ 5103606 (+)

Expression


Co-expression Network