CI01000057_05840771_05841346


Basic Information

Item Value
gene id CI01000057_05840771_05841346
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5840578 ~ 5841512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05840771_05841346.mRNA
CTATAAATGCAAGCTGAGTCTAATTAACTCCACACTTTCCTAATGGATTCAGGACGGGATAGACCTGGTGAAGCCCTAATACATATATAAAAAATACACTCATTTTGATTTTTTAAATGAAGTCTAACATTACTTTTTCAACAGTAAGATGTAACAAACTTAATTAAACACTGTTTGTTTTGTAGAGCTGACCATGAGCTGCGAGGGCCCGTCCATGTCTGACTTTGACAGAGGTTTCTGTACAGACCAGAGTCTGTCCCTATCAGCGGTTTCAGTCGACGGGTTCCTGAGGCCGAGTAAAGGTGTTGTGCTGGAGTATTCAGAGCCCAACCCGTGTCTGAACTACTCCACCAGTCTCTTATCACCTTTAGTTGCCCTCAACAAGAACGTTCTCTCTCCAGGCAACACCTTGAGCTCAGCGCTGAGCAGCCCGGTGGAAGGAAAGTCCTCCACGCCCTATGAGAGAGTCAGACTTCAGAAGCCTGTCCTGGCCAGTTCGCTGGACCTGTCCTGCGTCGACCTGACCACCACCCACCCCTCATGGGAAGTGTCCCTCGTGAAGGCCATAGTCGAGAGCCCCAAGTCATGTTTGGAGTCCACATGGAGTCCCATCAACCCGCCGGCGCCTCCTGAGATCTCGCTGCTGATGTCCGGAGCTTCAGAGGAGCTCCAGCGCTCGTGGAGGGAGATTGTCTGGCAAGGATCGGCTCAAGCTCTGGCAGTCCCAGATCTCCGAGAGGAACAGAGCTCATTCAACTTGGCCATGTGATGGACACCCTGTTTTAGGTATAATACTAATCATTGAGAGACATTTGAAGTAATGAAAGCTTGTTCTAACCTTCTGCTTTGTTTCACAGATGATGTGATGAACGGCACCTGTGATTATGTAAATGTATTTGTACTGCAAGTGTATTTATAGACTGGTTTTCATCAAA

Function

NR:

description
LOC100003370 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05840771_05841346.mRNA True 935 mRNA 0.48 1 5840578 5841512

Neighbor

gene id symbol gene type direction distance location
CI01000057_05776252_05786478 NA coding upstream 53000 5774308 ~ 5787578 (+)
CI01000057_05764224_05772045 DUSP7 coding upstream 68533 5764224 ~ 5772045 (+)
CI01000057_05700512_05711609 POC1A.L, POC1A coding upstream 128825 5700512 ~ 5711753 (+)
CI01000057_05678941_05683978 ALAS1 coding upstream 156556 5678941 ~ 5684022 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding upstream 172413 5664038 ~ 5668165 (+)
CI01000057_05884073_05908410 NA coding downstream 42561 5884073 ~ 5908434 (+)
CI01000057_05912175_05916639 NA coding downstream 70255 5911767 ~ 5917211 (+)
CI01000057_05927908_05930891 NA coding downstream 86396 5927908 ~ 5931845 (+)
CI01000057_05933567_05935825 NA coding downstream 92055 5933567 ~ 5936062 (+)
G245933 NA non-coding upstream 2741 5837608 ~ 5837837 (+)
G245880 NA non-coding upstream 10170 5828182 ~ 5830408 (+)
G245878 NA non-coding upstream 12738 5823728 ~ 5827840 (+)
G245838 NA non-coding upstream 286961 5548919 ~ 5553617 (+)
CI01000057_05535136_05545646 NA non-coding upstream 288289 5533651 ~ 5547218 (+)
G245940 NA non-coding downstream 104940 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 111281 5952793 ~ 5961077 (+)
G245943 NA non-coding downstream 121778 5963290 ~ 5963512 (+)
G245948 NA non-coding downstream 126352 5967864 ~ 5968226 (+)
G245949 NA non-coding downstream 131453 5972965 ~ 5973209 (+)
G245857 NA other upstream 183339 5655276 ~ 5657239 (+)
G245856 NA other upstream 197238 5637654 ~ 5643340 (+)
CI01000057_05564489_05579041 NA other upstream 260735 5564489 ~ 5579843 (+)
G245725 NA other upstream 736972 5098685 ~ 5103606 (+)
G245486 NA other upstream 1628497 4209897 ~ 4212081 (+)

Expression


Co-expression Network