CI01000057_05535136_05545646


Basic Information

Item Value
gene id CI01000057_05535136_05545646
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5533651 ~ 5547218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05535136_05545646.mRNA
CTATATAAAATGACATGCAGGTGTGTATTGCAAACCTGGTGACATGAGGTGTTAGATTCATCAGCACTCTCGTCATGACCGCAGGCAGAACGGTGAACAGAAGCTGAGCATGACAAAGACTCTCGTCGCTCTCATAATTGGATCAAGTCCGTGCTGAAAATGTTAAGTGTTTCACCTTTAATAGCAATGACAATGTCTAAAACAGTCATTAGAGACTCTGTAGGTTCGAGACAGAAAGTGCATGTTGTGCCCTTGTTCTGAGCTCAGAATCTCTCAGTGGAAGATCTGAATGCTTGTTGGCAGGTACTGTAGACATAGTGGCTGTCAGCAGCATTGATTGGCTTCCTATTACTGGATGTACTTTTTGAAGGCACTGAATCGACTGCACTTTAGCTGCTGGGAGCAGTTATATACTCTACATTGATCGAAATGAATAAAACATAAAAAAACACAGAACTAATGGAGTAGCTGAAAGGGTCGGCTTGGCATTGGTGTGTTGTTTCAGAACAATGCTCAGTTAAAAAAAAAATGTCTCATTGACACATTATTATTACTATTGCACATGCATTTGTACAAACGTAACGTAAGTCATAAAACTATGTCATTTATTAGATGAAAAGTCGAAATTCTCCATTAAAAATGGAGTGCAGCCGGTAGAAAACAAAAAAGAGAGGTATTTCGCATTTCGTGGAAGGACAGTGTTACTGCATAAAGGCCTTAAAAACTGCTAGATCTGCTCACTCTTCGACTCTATTAGATAAGAACAAACATAACCCTAGATATTTATCTGATACTATGGCTAAATTAACGAGAAATAAAGCTTCAACTTCAGAAGTTTCCAAACAGCACAGCAGTAATGACTTTATGAATTAGAGAGAAAATTATAACAATGCAACCGTCTACTACAGTATCGTATCAGATGTTGTGCTATAGACCCCCTGAGGAAAAACTCCATTCATTCATTGCTATAGGAGAGGAAGAATTGTCTAAACTTGTTAAATCCTCAAAATCAACAACATGTATGTTAGACCTTATACCCGAATAATTGATGATGCTGAAATTAATAATTTTCCTGTTATCACTGTAAAGCTGCTTTTTCAAACAATCTGTATTGTTAAAGAGCTATGTAAGGTAACTTGACTTAAAATCTATTTCAACTTTTTAATCTCATAATTATGACTTAGTATGGCATAATTTTAAGATTTACCAAAGCATGATTTTATGCTTATATTATTAAAAAAAATGTGTCTAGAGATACAGTATGTCTCTGATGTGTTTAAATATGTAATTAACAAATATTTGTTCAGTTCGGTTCTGCACACACTGTGTAGACTACAGTTTTTGTAAACGCACTTGTCATTACCTGATTTTGTCATGCCAACTGAATTTAGCAGCAGTGTGTGTGCGGCCTGTGTGTTACAATACATCACTGTGATTGTGATGTTTTTTTCCCCAAATCAAAGCTCCCATGACAGACTCCTCAGAATGGTTAATATAGCCATAATGATGTGGCTCATAATCGGTGATATTGACGCTTCATCCAGAGCACAGATGAGATTCTCACTAGGACACTTCCCCCTCTCATTCATACACACAGATGATGGCAGCTGCCTCTATCAAATGGCAGGATCAAAGGAGTCGACTCTTATTAGTATCCCTCTTTTATCTGCGGTTGTGTTCTCGTGTCACCCTGCTGTGCTCGCAGCGAGCTGTCAGATTGCTTTCTCTGTAACCGCTCATATAACAACCAAACACAAGAGAGTCGAACAAATGGCAAAGATTTTCCGTGGGAAGAAGGTTCAAGGAGATTATGACGTCAAAGTTGAACAGGCCGAGTTCTCTGAGATCAACCTCGTGGCTCATGCTAACGGCACATGCAGTGTGGACATGCAAGTGATCAGAAATGGAACCAAAGTGGTTCGGTCCTTCAAGCCTGACTTCGTTTTGGTCCGACAGCATGCCTATAGCATGACACAGAACGAAGACTTCCGGAATATAATCATCGGACTGCAGTACGCCGGGATCCCCAGCGTCAACTCACTGGAGTCCATTTACAACCTCTGTGACAAGCCATGGGCTGTGAGTGTGTCTCTTACTGTACCGTGTGCTTTTCTTGAGGTCAATGTGAAGGAGCTTTGGCTCGTCCTGATGATTTCTGCGGCTCCTTCTCACTGTGACGAGAATCAACATTATGCTGTTATTTTTATCAGGCCATCAGAATGTAATGATTTACAAAACCTGATTGTTTTAAAGCACTTCACACATGAGAAACTGACTATCACATAACATTACACTTTAGGTTTTGACGGTATTTCTTCTAAAGAAGCCAACTGTAGGCCAGGGTTATTGTCATTAATTAAAACTATTAAAATTTTTATTTTAATTTAAATAAAGCTGAAATTAATATATAAACGTTAGTTGAAGGACTTAAACTAAATGAAAATTACAATGGACAGGTGCTTCGGGAAGCTTCAAAGCCTTTGCAAATCATTTGTTTTGGATCATTGATTCAGAGCACACGTCACGTGATTTCAGTAAAATGTTTCGAAATTTCAGTGGTTGGCCACTAGGGGGCGATAAACTCTGTGAACCCATGAAACGGTGTCTATATATGATTTTTACCTGATCTCAGATCAGTTTTATACATGTGTAGACATTTAATGACACATTTGTATAATAAAAAGGAAGAGTTGTAATTAAGTCTCTCATTTGGTCTGAGTAAACAAACTCTCCATAAAACAAATCATTTAATAAAGACACTTAATATTTAATGTATTTGATGATTGCGTTTAATAGATTACACCTTCAATAAAACACTTGTAATTGGTTTGTAAGGGTGTTTATTACTAATAGACTCAATTTCTACTATTGCCATCATTTTCATCCGAAGGGATTCTCTGTTTTCTTCCAGTTTGCTCAGCTGATCAGCACCTACAAGAAACTGGGACCAGATAAATTCCCTCTGGTTGATCAGACATTCTACTCAAACTACAGGGACATGGTAAGAACAAAACCGCCTCTCATGTGATTGTGACCACGATAGAGATGATAATCAAAACCAAACAGACGTTTTGTTAGTTTTTGGCAGAGTATCAGAGGCACGAGCTGTACAGGCTCTGCCCCCTTCTGGAAAGGGGGCGGGGAGCAGCAGCTTATTTGCATTTAAAGACACATGCACGAAAACAGCATATTTTTCCTTCCATGTTTTTTTTCCTGGTTATGCAAATGTTAATGGAACATTCCATTTTATCGTTCTTCAAACATTACAGGAACGTTACTTTTGAATGTTCTCTGTTAGCTGGGATCATGTGACAACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05535136_05545646.mRNA False 3319 mRNA 0.38 5 5533651 5546679

Neighbor

gene id symbol gene type direction distance location
CI01000057_05503547_05504435 NA coding upstream 29122 5502755 ~ 5504529 (+)
CI01000057_05357955_05399136 ATG7 coding upstream 134399 5356907 ~ 5399252 (+)
CI01000057_05349185_05350825 HRH1 coding upstream 182593 5348216 ~ 5351058 (+)
CI01000057_05291346_05295377 NA coding upstream 237922 5289434 ~ 5295729 (+)
CI01000057_05263212_05269456 SLC6A1B, SLC6A1, SLC6A1A coding upstream 264141 5261871 ~ 5269510 (+)
CI01000057_05564489_05579041 NA coding downstream 17810 5564489 ~ 5579843 (+)
CI01000057_05596837_05615278 PPARG coding downstream 50158 5596837 ~ 5616010 (+)
CI01000057_05626464_05631670 NA coding downstream 79785 5626464 ~ 5631801 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding downstream 117359 5664038 ~ 5668165 (+)
CI01000057_05678941_05683978 ALAS1 coding downstream 132262 5678941 ~ 5684022 (+)
G245843 NA non-coding upstream 10582 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 49240 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 49689 5483734 ~ 5483962 (+)
G245830 NA non-coding upstream 57636 5475813 ~ 5476015 (+)
G245829 NA non-coding upstream 58370 5475006 ~ 5475281 (+)
G245838 NA non-coding downstream 2240 5548919 ~ 5553617 (+)
G245878 NA non-coding downstream 277049 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 281503 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 290929 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 399773 5946452 ~ 5946689 (+)
G245725 NA other upstream 430045 5098685 ~ 5103606 (+)
G245486 NA other upstream 1321570 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 1688960 3842028 ~ 3844691 (+)
G245401 NA other upstream 1995209 3537569 ~ 3538442 (+)
G245231 NA other upstream 2241089 3087096 ~ 3292562 (+)
G245856 NA other downstream 90975 5637654 ~ 5643340 (+)
G245857 NA other downstream 108597 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 365134 5911767 ~ 5917211 (+)
G245883 NA non-coding downstream 400504 5952793 ~ 5961077 (+)

Expression


Co-expression Network