CI01000057_05664038_05668068 (SLC11A2, NRAMP-ALPHA)


Basic Information

Item Value
gene id CI01000057_05664038_05668068
gene name SLC11A2, NRAMP-ALPHA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5664038 ~ 5668165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05664038_05668068.mRNA
TCACGAGACATTGACAGAGGCAACAAGAGAGAGGTGAAGGAGGCCAACAAGTACTACTTCATCGAGTCCTCCATCGCGCTCTTCGTCTCCTTCCTCATCAATGTTTTTGTGGTGGCCGTCTTCGCCGAGGCCTTCTATGGCAAGACAAACATGGAAGTGGGCCAGAAGTGTAATCAGAGCGGAAGTCCTTACAGTGATCTCTTCCCAGCCAACAACGAAACACTTGAAGTCGACATCTACAAAGGGGGTGTGGTTTTGGGCTGTTTTTTTGGCCCCGCTGCGCTGTATATTTGGGCGATTGGGATCCTCGCGGCTGGACAGAGTTCAACCATGACTGGAACCTACTCTGGTCAGTTTGTGATGGAGGGTTTCCTGAACCTGCGCTGGTCTCGCTTCGCTCGCGTGTTGCTGACGCGCTCCATCGCCATATTACCCACTCTTCTGGTGGCCGTCTTTCGGGACGTGCAGCATCTCACCGGCATGAACGACTTCCTGAACGTGCTGCAGAGCATACTGCTGCCGTTCGCTCTGATCCCCATCCTGACCTTCACCAGTTTGACGTCACTAATGAACGATTTTGCCAACGGACTCGCGTGGAAGATCAGTGGCGGTGTGCTCATCGTGGCGGTGTGTGCCATCAACATATACTTTGTGGTGGTGTACGTGATGGTTTTCAACAACATATATCTCTACGTCTTCTCTGTCTTAATCTCCATCGCCTACCTGTGCTTCATCGTCTATCTGGTCTGGCGCTGTCTGATCGCTCTCGGCATCCATTGTCTGGATTGCAGAGGCTCGGTTCAGTTCCCGCCAGCCGCTCTCGTCAATGAACAGCCAGAGTTCGATTCCTGATGTAACGTCTGGACTGACTCATGATGATTGTTTCCTGTCTAATCTTCAGGAAAACTTTTAACCTTTTGGACGTCTTCCAATCCTATCATATTTGGTA

Function

symbol description
slc11a2 Enables iron ion transmembrane transporter activity. Acts upstream of or within several processes, including embryonic hemopoiesis; hemoglobin biosynthetic process; and response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; lens; solid lens vesicle; and ventral mesoderm. Human ortholog(s) of this gene implicated in Parkinson's disease; amyotrophic lateral sclerosis; anemia; and hypochromic anemia. Orthologous to human SLC11A2 (solute carrier family 11 member 2).

NR:

description
natural resistance associated macrophage protein alpha, partial

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K12347 SLC11A1, NRAMP1; natural resistance-associated macrophage protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05664038_05668068.mRNA True 949 mRNA 0.51 7 5664038 5668165

Neighbor

gene id symbol gene type direction distance location
CI01000057_05626464_05631670 NA coding upstream 32237 5626464 ~ 5631801 (+)
CI01000057_05596837_05615278 PPARG coding upstream 48028 5596837 ~ 5616010 (+)
CI01000057_05564489_05579041 NA coding upstream 84227 5564489 ~ 5579843 (+)
CI01000057_05535136_05545646 NA coding upstream 117359 5533651 ~ 5547218 (+)
CI01000057_05503547_05504435 NA coding upstream 159509 5502755 ~ 5504529 (+)
CI01000057_05678941_05683978 ALAS1 coding downstream 10776 5678941 ~ 5684022 (+)
CI01000057_05700512_05711609 POC1A.L, POC1A coding downstream 32347 5700512 ~ 5711753 (+)
CI01000057_05764224_05772045 DUSP7 coding downstream 96059 5764224 ~ 5772045 (+)
CI01000057_05776252_05786478 NA coding downstream 106143 5774308 ~ 5787578 (+)
CI01000057_05840771_05841346 NA coding downstream 172413 5840578 ~ 5841512 (+)
G245838 NA non-coding upstream 110421 5548919 ~ 5553617 (+)
G245843 NA non-coding upstream 140969 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 179627 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 180076 5483734 ~ 5483962 (+)
G245878 NA non-coding downstream 155563 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 160017 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 169443 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 278287 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 284628 5952793 ~ 5961077 (+)
G245857 NA other upstream 6799 5655276 ~ 5657239 (+)
G245856 NA other upstream 20698 5637654 ~ 5643340 (+)
G245725 NA other upstream 560432 5098685 ~ 5103606 (+)
G245486 NA other upstream 1451957 4209897 ~ 4212081 (+)
CI01000057_05912175_05916639 NA other downstream 243648 5911767 ~ 5917211 (+)

Expression


Co-expression Network