CI01000057_05503547_05504435


Basic Information

Item Value
gene id CI01000057_05503547_05504435
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5502755 ~ 5504529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05503547_05504435.mRNA
CTATATAAATGGGTTTATGTTGTCTCCGTCCGGTCTGTATATGTGCTGCTTCTGTGTCACCTTTGCTGTGCAAAGACAGCATAATTTAGTGTGTGCTGAGGTCCTTAATTGAGGGCAGTGCTGTGCAAACCCAGACGGACACCATCACCCTTGAGCAAACCTCATAACCTCATGTTATATTTCTGCTGCTGCTGCCTGGTGTGTAAATCATGATCATCAATCCTCAGCCTCCATTTTGTTTGTATTTCCTGCAGTGGATAATATGGGTTTGTCATATTGAGCTCCTGTATTTAGGAGATCACCGCTGACTAAACGATGGCACAGGATCAATGTTTAGAAGACGCTACAGAGCCGTGTCTCCACCATCTGCAGATCCATCCCTCTGCCTCCCTCCAGACCAGGGTCCGCAGGTCATCCCGAGGAGCAGAGGGAGGGAGCTGGAGGGGGAGAGGCTCAAGGGAAGGGGGGATTGCTGTAGGAGCTCCCCTCCTTCCATGCATATTCATTGGAAACCCCGTTCAGCAGCTGCGGTACAACGTAGTACAGACACGTAAGCAATGATGTAGGAGATCGTGAGGGACTAGGGGGAGGGGGAGCGTGTGAGAAGAGAGAGAGCGAGGGAGGGAGGGAGGAGCGGAGACACAGGCAGAGTGTGAGCATCTCTTCCTGGCATTCGAGCTGTCACAGAGAAATTCAACAGCAATATCAGCACCGCACTCTTGAGAAGCGGCACAAGAGTCGGGAACGAGGCGATCGTCAACCCAGAGAGTTAAACCTCCACTAGCCACAGCCATGAACTTCCTGCGCCGTCGCCTCTCTGACAGCAGCTTCATTGCCAACCTGCCCAATGGCTACATGTCGGATCTCCAGAGGCCTGACCCGCCTCCTCCACCTCCTCCCACTGCTGGCACCAAGGCTCCCGCCGGACCGACTCCTGCCCCATCAGCTCCTCCTGCGGCCAAATCCCCCACCGCATCTCCGGCACCCGAGCGGCGGCCACAACCCGCCCAATCCTCCGGCTCGGGATTCTTCAGCTCCATCACCAACGTGGTCAAGCAAACCGCCGCTTCCGCGGGACTAGTGGAGCAGAGTCCGGCAGCGGTGTCGCGGAAGTTCAAGATCCTCCTGGTCATCGACGAACCCCAACACGAGTGGTCAGACTTCTCGAAATGTGGATCTTTTGCAGAGTTGACCACCAAGCCAATCCTAATTGAGGATTATGAACGGTCACGTTTTGCTGTTCTCCACACCAGTGCTGCCATTGATTGGCTTGGAAAAACCCCGTCCAACTGCACCTGATGAATGTTCAGGGTACATTACATTAATGAGCTTAGCGCTTTAATTCATGCGCTCCAGAAGACCAGCGGAGATAATTATTCACAGGCTTTGCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05503547_05504435.mRNA True 1393 mRNA 0.54 2 5502755 5504529

Neighbor

gene id symbol gene type direction distance location
CI01000057_05357955_05399136 ATG7 coding upstream 103503 5356907 ~ 5399252 (+)
CI01000057_05349185_05350825 HRH1 coding upstream 151697 5348216 ~ 5351058 (+)
CI01000057_05291346_05295377 NA coding upstream 207026 5289434 ~ 5295729 (+)
CI01000057_05263212_05269456 SLC6A1B, SLC6A1, SLC6A1A coding upstream 233245 5261871 ~ 5269510 (+)
CI01000057_05190329_05218573 SLC6A11 coding upstream 283909 5190159 ~ 5218846 (+)
CI01000057_05535136_05545646 NA coding downstream 29122 5533651 ~ 5547218 (+)
CI01000057_05564489_05579041 NA coding downstream 59960 5564489 ~ 5579843 (+)
CI01000057_05596837_05615278 PPARG coding downstream 92308 5596837 ~ 5616010 (+)
CI01000057_05626464_05631670 NA coding downstream 121935 5626464 ~ 5631801 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding downstream 159509 5664038 ~ 5668165 (+)
G245834 NA non-coding upstream 18344 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 18793 5483734 ~ 5483962 (+)
G245830 NA non-coding upstream 26740 5475813 ~ 5476015 (+)
G245829 NA non-coding upstream 27474 5475006 ~ 5475281 (+)
G245730 NA non-coding upstream 35639 5456989 ~ 5467116 (+)
G245843 NA non-coding downstream 2450 5506979 ~ 5523069 (+)
G245838 NA non-coding downstream 44390 5548919 ~ 5553617 (+)
G245878 NA non-coding downstream 319199 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 323653 5828182 ~ 5830408 (+)
G245725 NA other upstream 399149 5098685 ~ 5103606 (+)
G245486 NA other upstream 1290674 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 1658064 3842028 ~ 3844691 (+)
G245401 NA other upstream 1964313 3537569 ~ 3538442 (+)
G245231 NA other upstream 2210193 3087096 ~ 3292562 (+)
G245856 NA other downstream 133125 5637654 ~ 5643340 (+)
G245857 NA other downstream 150747 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 407284 5911767 ~ 5917211 (+)

Expression


Co-expression Network