CI01000057_05596837_05615278 (PPARG)


Basic Information

Item Value
gene id CI01000057_05596837_05615278
gene name PPARG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5596837 ~ 5616010 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05596837_05615278.mRNA
ATATGGTGGACACGCAGACGTTCGCCTGGCCCGTGGGATTCGGCCTGAGCGCTCTGGAACTGGACGAACTTGACGACAGCTCACACTCGCTGGACATGAAGCCTTTCTCCACGCTGGACTACGCCACCATTTCCGGCATCGAGTATGAGCCGAGTCCGCCGCAGAACGAGATTCCACACATGATGGATCTGACGCACATGTACAGCTACAGGACGCAGGAGAACTACAGGACGCAGGAGAACTACAGGATGCAGGAGAACTACAGGACGCAGGAGAGCATCTACAGAGCTCACGAGAGCAGCTACACCGCCGAGGACAGCGGATACAGAGCGCACCAGACACAAAACTCGATCAAACTCGAACCCGAGTCTCCTCCACAGTTTGCCGAGAACAGCCTGTCACTTTCCAAAGCTCACGAAGATCCGTCCGCCTCCGTGCTGAACATCGAGTGTCGTGTGTGTGGAGACAAGGCCTCGGGCTTCCATTACGGCGTTCATGCCTGCGAGGGCTGCAAGATCTCACTCACAGAAACGGTTCGTTCTCAGAGCAGGCGTTGTTTCTGGACGGGATTTTTCCGCAGAACCATTCGGTTGAAGCTGGTCTACGACCACTGCGACCTGCACTGCCGCATCCACAAGAAGAGTCGCAACAAGTGCCAGTACTGCCGCTTTCAGAAGTGCCTGATGGTTGGCATGTCACACAACGCCATTCGTTTTGGTCGAATGCCCCAAGCCGAGAAAGAGAAGCTCTTGGCCGAGTTCTCCACTGACATGGACCACATGCACCCAGAATCGGCTGATCTCCGAGCGCTGGCCAGGCATCTGTACGAGTCCTATCTGAAGTATTTCCCCCTGACCAAAGCCAAGGCCAGAGCCATACTGTCAGGAAAGACCAGCGACAATGCACCTTTCGTTATCCATGACATGAAGTCTCTGATGGAAGGAGAGCACATGATCAACTGCCGGCAGATGCCCATGCAGGAGCACCGGAGATCCGACATGGGCATCATGCAAGAAGTGGAGCTTCGTTTCTTCCACAGCTGCCAGTCGCGTTCGGCCGAAGCCGTCAGCGAAGTCACTGAATTTGCCAAGAGCATCCCGGGCTTTGTCAACCTGGACTTGAACGACCAAGTGACGCTCCTGAAGTACGGCGTCATCGAGGTGCTCATCATCATGATGGCTCCGCTCATGAACAAAGACGGCACGCTCATCTCCTACGGTCAGATCTTCATGACCCGCGAGTTCCTCAAGAGCCTGCGCAAACCCTTCTGTGAAATGATGGAGCCCAAGTTCGAGTTCTCCGTCAAGTTCAACATGCTGGAGTTGGACGACAGCGACATGGCGCTGTTCCTGGCCGTCATCATCCTGAGCGGAGATCGTCCCGGACTGCTGAACGTCAAGCCCATTGAGGATCTACAGGAGACGGTTCTTCACTCTCTGGAGCTGCAGCTGAAGACCAACCATCCAGACTCGCTCCAGCTCTTCGCCAAGGTCCTGCAGAAGATGACGGACCTGCGGCAGCTGGTGACCGACCACGTCCAGCTGATCCAGCTGATGAAGGAGACGGAGTTGGACTGGTGCTTACACCCGCTCCTGCAGGAGATCATGAGGGACTTGTACTAGTCTGTGTTTGTGATCCTGAGCTTTGGTTTACTGCTCTGAAGTTTTTGCACTGTAACAGACAGAGAAACCAGCAGAGAGTGATACTGGTTCGACAGAGATTCGTTTCTGCGTCGTGTCCACTGCTGCGGCGCTGGTTAAAGAGGGCAGTACCACTGTGAAAATGTTCTTTAGCAGGTGATTTTTGCATTCATGGTCCTTACAGATAAAGACAAGGACATAAAAGTGACACTCCATATTTAATTTTGAATACAGCGGTGTCCAAAAGTCTGAGACTACATTTGTAAAGATTAAAAAAAATAAATAAATAAATAAATAAATAAACAAACAAAAGGACTGACGTTCTGTTTCTAGCTGACTGGGCAAAAATTAAAACTCCTTTAAAGAGACTTTTTTTGCTTTCATTGAAGTTTAAAATGCTTTAATGCTCAGATTCTGTTCATTTCAGGAGAAATACTGCTGATTCTAGCTTCAAGAACTACTGTCTCAGACTTCTGGACACTGTTTTACTGTGGTTCATTTTTGGCCATCATCAAAAACTTGATAATAAGTTCAGATTTACACAATCTTCCGGAGTGCCACACATGATGTCTCCAACATTTGTTCATGTAGGACTGCAATGAAAGAGAACTGAAAACACACACAAACCAGAGACTGTGAGCAGATAAATCTGAATATGTTTATTTTAACCACTGATATTGGGTCACACGTGACCATTTCTTCCTCGTCAAGCAA

Function

symbol description
pparg Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to contribute to vitamin D response element binding activity. Acts upstream of or within triglyceride homeostasis. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including adipose tissue; digestive system; female organism; male organism; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including cardiovascular system disease (multiple); end stage renal disease; lipodystrophy (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human PPARG (peroxisome proliferator activated receptor gamma).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08530 NR1C3, PPARG; peroxisome proliferator-activated receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05596837_05615278.mRNA True 2354 mRNA 0.50 7 5596837 5616010

Neighbor

gene id symbol gene type direction distance location
CI01000057_05564489_05579041 NA coding upstream 17026 5564489 ~ 5579843 (+)
CI01000057_05535136_05545646 NA coding upstream 50158 5533651 ~ 5547218 (+)
CI01000057_05503547_05504435 NA coding upstream 92308 5502755 ~ 5504529 (+)
CI01000057_05357955_05399136 ATG7 coding upstream 197585 5356907 ~ 5399252 (+)
CI01000057_05349185_05350825 HRH1 coding upstream 245779 5348216 ~ 5351058 (+)
CI01000057_05626464_05631670 NA coding downstream 10454 5626464 ~ 5631801 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding downstream 48028 5664038 ~ 5668165 (+)
CI01000057_05678941_05683978 ALAS1 coding downstream 62931 5678941 ~ 5684022 (+)
CI01000057_05700512_05711609 POC1A.L, POC1A coding downstream 84502 5700512 ~ 5711753 (+)
CI01000057_05764224_05772045 DUSP7 coding downstream 148214 5764224 ~ 5772045 (+)
G245838 NA non-coding upstream 43220 5548919 ~ 5553617 (+)
G245843 NA non-coding upstream 73768 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 112426 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 112875 5483734 ~ 5483962 (+)
G245878 NA non-coding downstream 207718 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 212172 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 221598 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 330442 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 336783 5952793 ~ 5961077 (+)
G245725 NA other upstream 493231 5098685 ~ 5103606 (+)
G245486 NA other upstream 1384756 4209897 ~ 4212081 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 1752146 3842028 ~ 3844691 (+)
G245401 NA other upstream 2058395 3537569 ~ 3538442 (+)
G245856 NA other downstream 21644 5637654 ~ 5643340 (+)
G245857 NA other downstream 39266 5655276 ~ 5657239 (+)
CI01000057_05912175_05916639 NA other downstream 295803 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017205 NA coding CM030122.1 CM030122.1 50501043 ~ 50513355 (+)