CI01000057_05700512_05711609 (POC1A.L, POC1A)


Basic Information

Item Value
gene id CI01000057_05700512_05711609
gene name POC1A.L, POC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5700512 ~ 5711753 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05700512_05711609.mRNA
ATGACGAAAGAAACAGTGTTATTCATAATGACTGTGCAGGACGATCCGACCCTTGAGAGGCACTTTAAGGGTCACAGAGATGACGTCACGAGCCTGGACATCAGCGCTAACATGAAGCAGATCGCCTCGGGCTCCATGGACGCGTGTGTGATGATCTGGAACATGAAGCCTCAGATGAGGGCCTACAGGTTTGTGGGACACAAGGATGCGGTGACGAGCGTTCAGTTCTCGCCCTCCGGTCATCTGCTGGCCTCGGCGTCCCGAGACAAGACGGTGCGGCTCTGGGTGCCCAGCGTGAAAGGCGAGTCGACGGCGTTCAGAGCTCACACGGGAACGGTGCGCAGCGTCAGCTTCTCCAGCGACGGACAGACGCTCGTCACCGCGTCTGATGACAAGAGCATCAAAGTCTGGGCCGTCCATCGGCAGAAGTTCCTCTTCTCCCTCAACCAGCACATCAACTGGGTGCGCTGCGCCAAGTTTTCGCCGGATGGGCGGCTGATCGTTTCTGCCAGCGATGATAAAACAGTGAAGCTGTGGGACAAGAACAGCAGAGAGTGCATTCATTCGTTCTGTGAGCACGGCGGATATGTGAACTACGCCGACTTTCACCCGAGCGGCACCTGCATCGCAGCGGCTGGCACAGACAACACTGTGAAGGTGTGGGACATTCGCACGCACAAACTCCTGCAGCACTACCAAGTTCATAGTGCGGTGGTGAACGGCCTCTCCTTCCATCCGTCTGGAAACTACCTCATCACGGCCTCCAGCGACTCCACGCTCAAGATCCTGGACCTGCTGGAGGGCCGACTGCTCTACACGCTACACGGCCATCAGGTGATGACAGTTCAGACTCAAGCAAAAGGAGAAGAGACCTGTGGGAGTGCAGCTGAACTCACGTTTGGACCTTTGAGATGCTCGCTGTCCATCACTGGATTCGTGTCTGACACATTTATGGTCTTTTCACCAGTCAGATGGGCTGGTTTGAGGGTCCACCACACTGATCTGAGGTCTCCATCCCATCTGCTGATCTGGACTGTGAATCGCTTGTGTCTGACCTCATCTTCCTACACGGCTGTTGCGTAACTTCCCACTGAAAGGCTCTTGTTCATCCACACTCGGAGCTGCGCGCTCAGAACCACTGGTGTTTTTCCTCAGCCGTGTGTTTGGCCTTTAAATGAGACGCTCTCCAGCACCTCCTGCTATAGAGCAGAACCGTCAGTCCCAGAA

Function

symbol description
poc1a Predicted to act upstream of or within cell projection organization. Orthologous to human POC1A (POC1 centriolar protein A).

GO:

id name namespace
GO:0036064 ciliary basal body cellular_component

KEGG:

id description
K16482 POC1; centriolar protein POC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05700512_05711609.mRNA True 1227 mRNA 0.56 8 5700512 5711753

Neighbor

gene id symbol gene type direction distance location
CI01000057_05678941_05683978 ALAS1 coding upstream 16490 5678941 ~ 5684022 (+)
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding upstream 32347 5664038 ~ 5668165 (+)
CI01000057_05626464_05631670 NA coding upstream 68711 5626464 ~ 5631801 (+)
CI01000057_05596837_05615278 PPARG coding upstream 84502 5596837 ~ 5616010 (+)
CI01000057_05564489_05579041 NA coding upstream 120701 5564489 ~ 5579843 (+)
CI01000057_05764224_05772045 DUSP7 coding downstream 52471 5764224 ~ 5772045 (+)
CI01000057_05776252_05786478 NA coding downstream 62555 5774308 ~ 5787578 (+)
CI01000057_05840771_05841346 NA coding downstream 128825 5840578 ~ 5841512 (+)
CI01000057_05884073_05908410 NA coding downstream 172320 5884073 ~ 5908434 (+)
CI01000057_05912175_05916639 NA coding downstream 200014 5911767 ~ 5917211 (+)
G245838 NA non-coding upstream 146895 5548919 ~ 5553617 (+)
CI01000057_05535136_05545646 NA non-coding upstream 148223 5533651 ~ 5547218 (+)
G245843 NA non-coding upstream 177443 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 216101 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 216550 5483734 ~ 5483962 (+)
G245878 NA non-coding downstream 111975 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 116429 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 125855 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 234699 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 241040 5952793 ~ 5961077 (+)
G245857 NA other upstream 43273 5655276 ~ 5657239 (+)
G245856 NA other upstream 57172 5637654 ~ 5643340 (+)
G245725 NA other upstream 596906 5098685 ~ 5103606 (+)
G245486 NA other upstream 1488431 4209897 ~ 4212081 (+)

Expression


Co-expression Network