CI01000057_05678941_05683978 (ALAS1)


Basic Information

Item Value
gene id CI01000057_05678941_05683978
gene name ALAS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5678941 ~ 5684022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05678941_05683978.mRNA
ACTTTCTGGACAATCAACTATGGACGCCATCATTCGCTGCCCATTCTTGTCTCGCGTCCCCCAAACCTTCCTGCAGCAGGCCAGGAAGTCCTTGGTGGCGTACGCAGTGAAATGTCCCGTCATGATGGACCTTGCCTCGAGGCCACTGGTCCGCTCGCTCTGCTCCACCTCCTCCAGCTTCCAGAAGGTCGAGAACACTACCCCAGCCGGAGACGAAGCCCCCAAGGTTCCTGCGGGTCACCCCGTGCCTCCGGCGGGCTCAACGGCCGCCTCCAAATGCCCGTTCCTGGCCGCAGAGATGGGTCAGAAGAACAGCAGCGTGGTTCGGCAGGCCAGCATGGCTCTTCAGGAGGATGTTTCTGAGGTTCGCACCATGCGCAAAGACGTCTCTCCATCTGAGCTCAATCCTTTGGTGAAGGACACCAAGATGGGAGGAAACCTCATGAAGAAGCTGATGAAGCAGCGTCCCACTAGGGTCTCTCATTTGCTGCAGGAGAACATGCCCAAAACTGTGTCCAACTTTCGTTATGATGAGTTCTTTGAGAAGAAGATTGAGGAAAAGAAGGACGATCACACGTACCGTGTGTTTAAGACGGTGAACCGCAGAGCTACGGAGTTCCCGATGGCGGACGATTACTCAGAGTCCTTGTCCTTTAGAAGGAACGTCTCTGTGTGGTGCAGCAACGACTATCTGGGCATGAGCCGCCACCCGCAGGTGGTGCAAACTATAACGGACACTTTAGGGAAGCACGGTTCGGGAGCTGGAGGGACTCGGAATATATCGGGGACGAGTAAGTTCCACGTGGACCTGGAGCACGAGCTGGCCGATCTTCATGGGAAGGACGCTGCCTTGCTCTTCACCTCCTGCTTTGTGGCCAATGACTCCACACTCTTCACGCTGGCCAAGATGCTGCCTGGTTGTGAGATCTATTCAGACGCGGGCAACCATGCCTCAATGATTCAGGGCATCAGGAACAGCGGCGCCAAGAAGTTTATCTTCCGTCACAATGACGCCAGACATTTACGCCAGCTTCTAGAGAAATCGGATCCCTCCACTCCAAAGATTGTAGCCTTTGAAACGGTGCACTCGATGGACGGTGCTGTGTGTCCGCTGGAGGAGATGTGTGACATCGCCCACGAGTTTGGCGCCATCACTTTCGTGGACGAGGTTCACGCGGTGGGACTTTACGGAGCCAGGGGAGGCGGCATCGGAGACCGCGATGGGGTGATGCACAAGATGGACATCATCTCTGGCACACTGGGGAAAGCGTTCGGGTGTGTCGGCGGCTACATCGCTAGCACCAACGCTCTGGTGGACACCGTACGTTCCTACGCCGCCGGCTTCATTTTCACCACGTCACTTCCTCCCATGCTGCTCGCCGGCGCTCGCCAGTCCGTCCAGATCCTGAAGAGCGAGGAAGGCCGCGCGCTCCGCCGCAAACACCAGCGCAACGTCAAGCTGCTGCGTCAGATGCTGATGGACACCGGCCTGCCTGTGGTTCACTGCCCCAGCCACATCATTCCTATCCGAGTTTCGAATGCTGAGAAGAACACTGAGGTCTGTGACATCATGATGAGCCGCTACAACATCTACGTCCAGGCCATTAACTACCCGACCGTGGCCCGCGGAGAGGAGCTGCTCCGCATCGCGCCCACGCCTCACCACACGCCGCAGATGATGCAGTACTTTGTGGATAAGCTGACGCAGACGTGGACGGAGGTCGGTCTGGAGCTGAAGCCGCACTCATCCGCCGAGTGTAACTTCTGCCGGCAGCCGCTGCACTTCCAGCTGATGAGCGAGAGGGAGAAATCCTTCTTCAGCGGCCTCAGCCAACCCGTGTCGGCCTGCGGCTGACCAGAGCGTGCAGATCCTCGTTCCATGTACATCAGATCCACAGA

Function

symbol description
alas1 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within neutrophil differentiation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including EVL; digestive system; periderm; polster; and pronephros. Orthologous to human ALAS1 (5'-aminolevulinate synthase 1).

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05678941_05683978.mRNA True 1899 mRNA 0.58 10 5678941 5684022

Neighbor

gene id symbol gene type direction distance location
CI01000057_05664038_05668068 SLC11A2, NRAMP-ALPHA coding upstream 10776 5664038 ~ 5668165 (+)
CI01000057_05626464_05631670 NA coding upstream 47140 5626464 ~ 5631801 (+)
CI01000057_05596837_05615278 PPARG coding upstream 62931 5596837 ~ 5616010 (+)
CI01000057_05564489_05579041 NA coding upstream 99130 5564489 ~ 5579843 (+)
CI01000057_05535136_05545646 NA coding upstream 132262 5533651 ~ 5547218 (+)
CI01000057_05700512_05711609 POC1A.L, POC1A coding downstream 16490 5700512 ~ 5711753 (+)
CI01000057_05764224_05772045 DUSP7 coding downstream 80202 5764224 ~ 5772045 (+)
CI01000057_05776252_05786478 NA coding downstream 90286 5774308 ~ 5787578 (+)
CI01000057_05840771_05841346 NA coding downstream 156556 5840578 ~ 5841512 (+)
CI01000057_05884073_05908410 NA coding downstream 200051 5884073 ~ 5908434 (+)
G245838 NA non-coding upstream 125324 5548919 ~ 5553617 (+)
G245843 NA non-coding upstream 155872 5506979 ~ 5523069 (+)
G245834 NA non-coding upstream 194530 5484204 ~ 5484411 (+)
G245833 NA non-coding upstream 194979 5483734 ~ 5483962 (+)
G245878 NA non-coding downstream 139706 5823728 ~ 5827840 (+)
G245880 NA non-coding downstream 144160 5828182 ~ 5830408 (+)
G245933 NA non-coding downstream 153586 5837608 ~ 5837837 (+)
G245940 NA non-coding downstream 262430 5946452 ~ 5946689 (+)
G245883 NA non-coding downstream 268771 5952793 ~ 5961077 (+)
G245857 NA other upstream 21702 5655276 ~ 5657239 (+)
G245856 NA other upstream 35601 5637654 ~ 5643340 (+)
G245725 NA other upstream 575335 5098685 ~ 5103606 (+)
G245486 NA other upstream 1466860 4209897 ~ 4212081 (+)
CI01000057_05912175_05916639 NA other downstream 227791 5911767 ~ 5917211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017179 NA coding CM030122.1 CM030122.1 49669201 ~ 49675834 (-)