Gene
RNA
| Item | Value |
|---|---|
| gene id | G243975 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000057 |
| NCBI id | null |
| chromosome length | 6014843 |
| location | 2576453 ~ 2576852 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU276911 | False | 400 | TUCP | 0.49 | 1 | 2576453 | 2576852 |
| TU276910 | True | 383 | TUCP | 0.48 | 1 | 2576470 | 2576852 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000057_02548444_02558549 | NA | coding | upstream | 16761 | 2547895 ~ 2559692 (+) |
| CI01000057_02416295_02420310 | CDA | coding | upstream | 155911 | 2416295 ~ 2420542 (+) |
| CI01000057_02412538_02415631 | NA | coding | upstream | 160520 | 2411516 ~ 2415933 (+) |
| CI01000057_02395285_02396439 | NA | coding | upstream | 179892 | 2394598 ~ 2396561 (+) |
| CI01000057_02347155_02370642 | PUSL1 | coding | upstream | 205789 | 2347155 ~ 2370664 (+) |
| CI01000057_02618561_02619733 | GATA2A, GATA2 | coding | downstream | 41568 | 2618420 ~ 2619771 (+) |
| CI01000057_02693930_02700711 | GNL3 | coding | downstream | 117078 | 2693930 ~ 2700711 (+) |
| CI01000057_02707814_02708251 | NA | coding | downstream | 130962 | 2707814 ~ 2708374 (+) |
| CI01000057_02758170_02782493 | CAMK1A, CAMK1.L, CAMK1B, CAMK1 | coding | downstream | 181318 | 2758170 ~ 2782566 (+) |
| CI01000057_02794112_02799150 | NA | coding | downstream | 217139 | 2793991 ~ 2799153 (+) |
| G243973 | NA | non-coding | upstream | 5655 | 2570555 ~ 2570798 (+) |
| G243933 | NA | non-coding | upstream | 74544 | 2501533 ~ 2501909 (+) |
| G243874 | NA | non-coding | upstream | 121336 | 2438184 ~ 2455117 (+) |
| G243876 | NA | non-coding | upstream | 144263 | 2431886 ~ 2432190 (+) |
| G243877 | NA | non-coding | upstream | 148879 | 2423960 ~ 2427574 (+) |
| G243985 | NA | non-coding | downstream | 14646 | 2591498 ~ 2591769 (+) |
| G243986 | NA | non-coding | downstream | 15281 | 2592133 ~ 2592371 (+) |
| G243989 | NA | non-coding | downstream | 19853 | 2596705 ~ 2682061 (+) |
| G243995 | NA | non-coding | downstream | 45659 | 2622511 ~ 2625912 (+) |
| G243991 | NA | non-coding | downstream | 58385 | 2635237 ~ 2652560 (+) |
| G243558 | NA | other | upstream | 1618082 | 956063 ~ 958371 (+) |
| G243557 | NA | other | upstream | 1621258 | 954843 ~ 955195 (+) |
| CI01000057_00417827_00418207 | NA | other | upstream | 2155943 | 417700 ~ 418655 (+) |
| G245231 | NA | other | downstream | 510244 | 3087096 ~ 3292562 (+) |
| G245401 | NA | other | downstream | 960717 | 3537569 ~ 3538442 (+) |
| CI01000057_03842028_03844033 | NDUFS7.S, MGC85267, NDUFS7 | other | downstream | 1265176 | 3842028 ~ 3844691 (+) |
| G245486 | NA | other | downstream | 1633045 | 4209897 ~ 4212081 (+) |
