CI01000057_02548444_02558549


Basic Information

Item Value
gene id CI01000057_02548444_02558549
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2547895 ~ 2559692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02548444_02558549.mRNA
CCTTAAATCCCCCGCTTTCCCCTGCTTGTCAGCACCCCTCTACCTCATTCTCGCCCTGAGCCCACCCCCTGCCTGAGGGCCACCCCACCACCCGCTCCAACAGCAATTAATCCATCTATTGATCACAGAGTGCGACTCAGCAAGCCTCTGAACCTGCACACCAAAGCTCTCCTGTCTCAGATATTGAACTCTTTTTTTTTTTTTTTTTCTTCTTCTTCCTGTGATTTTTAAGTGTTTTTGTTGCACTTGGTTCCTCTGTCACCTCTCTCTCTCTCTCTCTCTAGAATAGCTTATGCAGGCCACTGTGGTCATTATTATAACGTCACACTTGGGAGCCATTTTGTCTCGGCCTTGTCAAAGGATCGTACAATGAACCAGCACAGGCTGTTGGTATCTGTTGTAATGAATGATCTGTCATAATCAATCATAATGAGAATGTATGAGAAACGCCACCTGTAGCCAATCAGGTATAAGATGGTTTCCATATCCTACCAAAATGAGAGCCACTGTGAATAAAAAAGACACGAAACACAACATAGGATAATAATAATGCTAATTAAAGGAGCAACTGCCAGCCAACACATGCGTTGGCGCCATCTTGCTCGGCTTTTTCATAATTTATCTCAGTCTTTTAAGAGGCCTGAATGCCCCTCTTCATCCTCTCTAAATGCCACATTATGGGGCACCGAAGAGTGGGATATCCTGCGCTGCGACCCTGGGGGTCGCAGGTCGAGAGGAACAGACGACAAGATGAAAGAGACTCTAATTATGCCGAAACAAAAACTACCTTGTCTCCAAACAACTATTTTTGGGTGGGTTCATGGGCGTCTGTTTGGGCTGGGCCGGGGCTCTGGGTGGAGTAATGTGGAGAAGGGTGAAACTCGGTTCGGGATTAGAAATGTGTTCCAGTCGCCCCTGATCTCCCCTTCTGCTCCCGCCTTGATGGTATTCGGCACAGTCAGCATGTTAGACAGAAGCCTCGCTGCCACCTCAGAGTGTTCAAAAAGAGGTAGTAAAGCAGAAAAGAGGGTCTACAAGGAGTTGGCTGCAGGTCGTCTCAGAGGGTTCAACCGTTCAGATTCCTCCGGGAGATTCACGATCGGACCCTGTAGGAATGCGGTCGGGCCACGTGCCAGTGCACTTTTCCAGATTAATAAGACTCGGGCAGCCACAGCTCTGACGTATGCTAATGGGCCTAGTGCGATTCAGCAGATCATAAAACTCAGATATTCCTTCTTATATAAGGCGCCCAGACGTGAAGTGGGAGATGTTAAAGGCTTGTGTGGACTGCAGCAAAAAGAAGGCATGAAAAAATGAACCGCGTGTCACAAAGCTCTCAAAGAAATGAATCTGCCTAGATGCAGACATGCAAAAAAACAAAAAAAAAAAAAAACAGCCTTCATATGCACTGGGGTGACCACACATCCCATTTCTTTCTTCTGTGGAACACAAAAGAAAATATTTTCTATAAAACGTCTGTGTTTGTTTTTGTTGTCCATAAAAAGAAAGTCAATGGGGTCCAATGTGGATAAAAACAATTCTTCAAAAACATTCTTCAGAATGTCTTCATTTGTGTTCCACAGAAGAAAGTTTAAGTTTGGAACAACACAAGGTTAAATAAATGTTGACAGAGTTTTCATTTTTGGGTGAATTATCGCTTTAAAACAAGTATTCTCAGTGTCCTTCTGGTATCATTTGTGGTTCGAATGGTCAAACAACAGCTGCATTTTCAGTGAAGAGCTATAAGCACCCTTTCCATACAGCATGTGCTGTCACGGTTGATTTTCTGTCAGCCACTGACGTAAATTGGTCATTGTAGATCACGCCTGATGTTTCATTAACAAAGTTCAGGAGGAGCATGTTCAGATAATCTACCTAATTAGTGCAAAAGGAGGCATATATGTAGAGTCGACTTACCTCTGTTTCACGATAGTCTTTCCAGTGTCCCTCCTCCACCCCAACTCCACTCTCGATTATTACAATCCCAGCCAGGGATTTGGTGGTGGGGGGGTGGGGGTTCTATGGGTTTGGGTCAAATTCCGAGCTCGGAGCCCTCTCCCAGTACAGCATGCCAAATATGCATGTTTTATACTATACCTGATTATATGTAAGTGTGAACTCATAAATTAAACAGCTTAAAACAGAATGTCCAACATGTTACATTTTAGAGTTTTATATTCCAAGGTTTGGATTAGTTGATGAAATGTACTGGTAAGTCTGTACTTGTACTGTAAATATCAAAATCTACATAATGCATTTATTTTTATGTTATTTGCTTTTGATTAAAAGAGGAAGAGGATTAAAACATCAGTAGGTGTAAATTAAAGATATGTTTTAAATATATATTTTAGATTTTTTTTCTCATTTAATAAAATAAACTATATCTTTTGAAACTACTGTTATTGATATCATTACTTTTGACAACCCTGCTATCTATGTGGTAGTGTAGGAAACATAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02548444_02558549.mRNA True 2460 mRNA 0.42 6 2547895 2559692

Neighbor

gene id symbol gene type direction distance location
CI01000057_02416295_02420310 CDA coding upstream 127353 2416295 ~ 2420542 (+)
CI01000057_02412538_02415631 NA coding upstream 131962 2411516 ~ 2415933 (+)
CI01000057_02395285_02396439 NA coding upstream 151334 2394598 ~ 2396561 (+)
CI01000057_02347155_02370642 PUSL1 coding upstream 177231 2347155 ~ 2370664 (+)
CI01000057_02244141_02246824 NA coding upstream 300266 2243793 ~ 2247724 (+)
CI01000057_02618561_02619733 GATA2A, GATA2 coding downstream 58728 2618420 ~ 2619771 (+)
CI01000057_02693930_02700711 GNL3 coding downstream 134238 2693930 ~ 2700711 (+)
CI01000057_02707814_02708251 NA coding downstream 148122 2707814 ~ 2708374 (+)
CI01000057_02758170_02782493 CAMK1A, CAMK1.L, CAMK1B, CAMK1 coding downstream 198478 2758170 ~ 2782566 (+)
CI01000057_02794112_02799150 NA coding downstream 234299 2793991 ~ 2799153 (+)
G243933 NA non-coding upstream 45986 2501533 ~ 2501909 (+)
G243874 NA non-coding upstream 92778 2438184 ~ 2455117 (+)
G243876 NA non-coding upstream 115705 2431886 ~ 2432190 (+)
G243877 NA non-coding upstream 120321 2423960 ~ 2427574 (+)
G243924 NA non-coding upstream 145458 2402181 ~ 2402437 (+)
G243973 NA non-coding downstream 10863 2570555 ~ 2570798 (+)
G243985 NA non-coding downstream 31806 2591498 ~ 2591769 (+)
G243986 NA non-coding downstream 32441 2592133 ~ 2592371 (+)
G243989 NA non-coding downstream 37013 2596705 ~ 2682061 (+)
G243995 NA non-coding downstream 62819 2622511 ~ 2625912 (+)
G243558 NA other upstream 1589524 956063 ~ 958371 (+)
G243557 NA other upstream 1592700 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 2127385 417700 ~ 418655 (+)
G243975 NA other downstream 16761 2576453 ~ 2576852 (+)
G243991 NA other downstream 75545 2635237 ~ 2652560 (+)
G245231 NA other downstream 527404 3087096 ~ 3292562 (+)
G245401 NA other downstream 977877 3537569 ~ 3538442 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other downstream 1282336 3842028 ~ 3844691 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003170 NA non-coding NC_007122.7 CM002895.2 3771266 ~ 3783125 (+)