CI01000057_02347155_02370642 (PUSL1)


Basic Information

Item Value
gene id CI01000057_02347155_02370642
gene name PUSL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2347155 ~ 2370664 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02347155_02370642.mRNA
AGTGCGGTGCGAAAGCTAAAGCCGGTCAATGAGGTGTCAGTGTCCATCTCCAGTAGAACAGACACTGGTGTGCACGCCTTGTGTAACTCTGCACATGTGGATATCCAGCGGAGAGCAGACAAACCACCACTGCTGGAGCAAACCCTGGTGGATGCCTTAAACTTCCACTTGAAAGCAGAACCTATAAGTGTCTTGATTACTCTGGACTTACTTGAAACTTTTTCAGTGGAAATTGGCAGAATAACCAGGGCTTACCGTGTCCAAAGCGACTTCCACGCACGCTATCAGGCCATATCACGGACATATGTGTACCGCTTTGCTTTGGGTCTCAGACATCACACAGAAATGCCAGTAACGGAGAGGGATCTATGCTGGGCATTACGAGACACGAGGCTAAATATCGATGCAATGCAAGAGGCTTCTGCACTGCTGATAGGAACCCATGACTTCAGCACCTTCCGTGCCTTGAACTCAGAGACCCCCTTTAAGAACCCAGTGAAGACCCTAGAGTCGGCCCGGCTGGAGCCTGGGGTCTCGTTCAGTCAGAGACACTTTCACAGAGATATTCAGTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAGACAAGTGCGGAGGATGACTGGGGCGCTGGTTGCTGTTGGTCAGGGTAGACTGTCTGTTAGTCAGATTCAGGAGCTTCTAAAGGCACGTGATTCATTGGCATTCCCAAATAACCTGACCGCCCCAGCCCACGGCCTGTTTCTGACCAATGTACAGTACAGAGAAACGGTGGGGAATATGTTGTCCTGCTAAGGGACAGTAAAGTACATCAGTA

Function

symbol description
pusl1 Predicted to enable RNA binding activity and tRNA pseudouridine synthase activity. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUSL1 (pseudouridine synthase like 1).

NR:

description
tRNA pseudouridine synthase-like 1

GO:

id name namespace
GO:0008033 tRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02347155_02370642.mRNA True 823 mRNA 0.49 7 2347155 2370664

Neighbor

gene id symbol gene type direction distance location
CI01000057_02244141_02246824 NA coding upstream 99526 2243793 ~ 2247724 (+)
CI01000057_02228717_02239180 NA coding upstream 107797 2227799 ~ 2239358 (+)
CI01000057_02212256_02222966 NA coding upstream 124069 2212205 ~ 2223086 (+)
CI01000057_02198818_02199189 NA coding upstream 147850 2198588 ~ 2199305 (+)
CI01000057_02168933_02179593 MMP19 coding upstream 167129 2168933 ~ 2180026 (+)
CI01000057_02395285_02396439 NA coding downstream 24324 2394598 ~ 2396561 (+)
CI01000057_02412538_02415631 NA coding downstream 40852 2411516 ~ 2415933 (+)
CI01000057_02416295_02420310 CDA coding downstream 45631 2416295 ~ 2420542 (+)
CI01000057_02548444_02558549 NA coding downstream 177231 2547895 ~ 2559692 (+)
CI01000057_02618561_02619733 GATA2A, GATA2 coding downstream 247756 2618420 ~ 2619771 (+)
G243902 NA non-coding upstream 2469 2344420 ~ 2344686 (+)
G243896 NA non-coding upstream 13350 2333589 ~ 2333805 (+)
G243895 NA non-coding upstream 15021 2331915 ~ 2332134 (+)
G243894 NA non-coding upstream 16565 2330357 ~ 2330590 (+)
G243893 NA non-coding upstream 17606 2329248 ~ 2329549 (+)
G243875 NA non-coding downstream 5313 2375977 ~ 2384272 (+)
G243924 NA non-coding downstream 31517 2402181 ~ 2402437 (+)
G243877 NA non-coding downstream 53296 2423960 ~ 2427574 (+)
G243876 NA non-coding downstream 61222 2431886 ~ 2432190 (+)
G243874 NA non-coding downstream 67520 2438184 ~ 2455117 (+)
G243558 NA other upstream 1388784 956063 ~ 958371 (+)
G243557 NA other upstream 1391960 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 1926645 417700 ~ 418655 (+)
G243975 NA other downstream 205789 2576453 ~ 2576852 (+)
G243991 NA other downstream 264573 2635237 ~ 2652560 (+)
G245231 NA other downstream 716432 3087096 ~ 3292562 (+)
G245401 NA other downstream 1166905 3537569 ~ 3538442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location