CI01000057_02212256_02222966


Basic Information

Item Value
gene id CI01000057_02212256_02222966
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2212205 ~ 2223086 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02212256_02222966.mRNA
ACATTAAAACCGGAAGGAAGCAGGTTTCCAAATACAAACCTCTTCAAGAAAATGGCGGAAGTCGTGGAGCTGCATAAACTCAAGTTGGCTGAGCTGAAGCTAGAATGTACTGCTCGAGGGCTGGATGCCAAAGGAAATAAAGCGGATCTGATTGCCCGGCTGCAGGCTTACCTGGAAGAGCATGAAGAAGTGAATGAAGAGGAAGTTCTGGGAGTGTATGGTGATGGTGAGGGTGAGGGTGAGGAGTCCTTTGCCAAAGAAGAGAGCGCTGACCAGAAAGAGGAGTTTAGTCCACCTGAAACAGTGACTGAGAAAAAACTGGTCAAGATGAGCCCTCCTGCTGCAGTTGGTGAGAGGCTTCAGAAGAGAGCGGAGCGCTTCAATGTTCCACCGAGTGTGGACACAAAAAAGGCAGCGCGAGCAGCAAGGTTTGGTTTGCCAGTACCTGACTCTTCAAAAGGAACTTCAGCAAAAATAAGTGTTGACGTTGAGGTATTAAAGAAGAGAGCAGAACGTTTTGGCATGAATGTCTCCTCAGTTTCTAAAAAGTTTGAGGATGATGAAAAACTTAAGAAGAGGAAGGAGAGATTTGGCATCGTCACAAGTGCAGCCTCCGCTGGAGCTGAGGATTCAGAGGCAAAGAAGCGAAAACGTGCTGAGCGGTTTGGAAATGTATAAAAATGGATCTGACACACTTTTTTTTACTTTTTTTAAATGAAGAGTTCTTTGAGGTTGATTTTGTGATACACTTGTAATTCCTGTAGTACCATGCTTTGTTTTTTTTTTCTGCTATTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02212256_02222966.mRNA True 798 mRNA 0.44 11 2212205 2223086

Neighbor

gene id symbol gene type direction distance location
CI01000057_02198818_02199189 NA coding upstream 12900 2198588 ~ 2199305 (+)
CI01000057_02168933_02179593 MMP19 coding upstream 32179 2168933 ~ 2180026 (+)
CI01000057_02126499_02142817 TIMELESS, TIMELESSA, TIMELESS.S coding upstream 69081 2126499 ~ 2143124 (+)
CI01000057_02043653_02103160 NA coding upstream 108551 2043503 ~ 2103654 (+)
CI01000057_01926510_01929865 NA coding upstream 282181 1926510 ~ 1930024 (+)
CI01000057_02228717_02239180 NA coding downstream 4713 2227799 ~ 2239358 (+)
CI01000057_02244141_02246824 NA coding downstream 20707 2243793 ~ 2247724 (+)
CI01000057_02347155_02370642 PUSL1 coding downstream 124069 2347155 ~ 2370664 (+)
CI01000057_02395285_02396439 NA coding downstream 171902 2394598 ~ 2396561 (+)
CI01000057_02412538_02415631 NA coding downstream 188430 2411516 ~ 2415933 (+)
G243850 NA non-coding upstream 2963 2208935 ~ 2209242 (+)
G243837 NA non-coding upstream 82979 2128490 ~ 2129226 (+)
G243797 NA non-coding upstream 100689 2105697 ~ 2111516 (+)
G243740 NA non-coding upstream 502729 1704632 ~ 1709476 (+)
G243858 NA non-coding downstream 22168 2245254 ~ 2246107 (+)
G243798 NA non-coding downstream 26057 2249143 ~ 2250642 (+)
G243813 NA non-coding downstream 27827 2250913 ~ 2251451 (+)
G243558 NA other upstream 1253834 956063 ~ 958371 (+)
G243557 NA other upstream 1257010 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 1791695 417700 ~ 418655 (+)
G243975 NA other downstream 353367 2576453 ~ 2576852 (+)
G243991 NA other downstream 412151 2635237 ~ 2652560 (+)
G245231 NA other downstream 864010 3087096 ~ 3292562 (+)
G245401 NA other downstream 1314483 3537569 ~ 3538442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003163 sarnp coding NC_007122.7 CM002895.2 3308656 ~ 3318747 (+)