G243798


Basic Information

Item Value
gene id G243798
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2249143 ~ 2250642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU276708
CAGTTTAAATTAGGAATAAGAAAACAATCACATATTTGAATACATCTGAAAGTAGGGCTTCACAAAGGACTTAAACAGAAATATGAACAGCTGGGTTAAAGTGCCCCTATTAAGGATTTTTCAAAATGACCTTTCATGTAAGTGTGTAACATAGCTCTAAGTGAATGAAAACATCCTGCAAAGTTTTTAATCAGAAAGTGCACCGTATATAAAGTTGTCTCTCAAAAGTAAGAGTCGACTCTGAATCAATTAAACGAATCGTTTGTAAAACGAATCCCAAACCATTTCGTTGTGACGTCAAGACGAAACATTAGCATATTGCCCGCCCACTTATTGCATGCGCAGACACCAGGTGTAACTTGAAACCCCTCAAACACTGCCAATACCTGAAGAATCAGTGGTTAAAATTCATCTTTACAACGATACCACAGCAGTATAACCCGAACCTTGTGCTGTGTGTTCCCGTCATTTTACTGACGACTGCTTCTTCAACCTAAATGTGTTCAACAAGGGATTCATAAGCCAGTTGTTATTAAAGGATGGGTCAGTACCCAGTTTATTTGGACCAGCTTCTTCCTCCTCCGAATCACAACCTGTAAGTACGATTAATAATTGTTGCTGTTATGTTCTCCGTCACAATACGCATTTAGTTGTGTGTGTTGTGTACGCTCCGCGCAGCTTGTAGGTCTCTGGCTAACCAGCTAACAGCAATATGTGTTCGCTCACAATTGTCTAAACATGTGTCAAATGTTTGTCGTTGTTATTAATTGGAGTTATGATAAAGAATAGAGCAATACATTGTCTGCAGTGCTTTATCAATTTTTGGATCCCAAATGGCACCCTAAACCAGAGATTATATATTATAGAGAGATGAGAGAGTTTGTGTCTCTTACTATTGGAGAAAGCGTAACGGCTAACTTGGATCACGTGAGGCACCTCAGCCAATCATATAAAGGCAGTGAATATACAATCTCTGCTCTGGTCTCCTTACCTGCGTACCGCCACAGCCAGAACGTTAGCATTAGCCGTTATGCTTTTTTGGCTAAAGGTTGCAGGCTTGTCTTCCAGTGGCTTTGCCTAAACCCTCACGGTCTTCCTCTGAGTCTGCACTTTCGTGACGTAATGCCCGCTTTTACTGCTGGGTAAAGTCCTCTGTGTAGCTTGTGGACTTGCAGGCTCAGCAAAAGTGTGCATTGAGGGCGCATAGCGGCCGCAAAGGGGGCGCTCGTGAGCACCCTTCTGAAGCCTAAAATTGACAAATAGGACATCCTACGGTCTCGTGGACTTAACGGACACGAGCACGCGGCAGCCATTGTAAGGCCACAAGACCGAAAGTGCTATGAAGTGTACCATTTGGGATTCAGCCTAAATAGCCATGCTTTACTATAGTTTGGTCCTGTCCCAAATGGTACCGTAAACACTTGCGGTCTTCCTACGAGTCCGCACTTTCCTGACGTGACGCCACTTTGACTGTCGGGAAGAAGTCTGCTGCGGAGTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU276708 True 1500 lncRNA 0.43 1 2249143 2250642

Neighbor

gene id symbol gene type direction distance location
CI01000057_02244141_02246824 NA coding upstream 1514 2243793 ~ 2247724 (+)
CI01000057_02228717_02239180 NA coding upstream 9785 2227799 ~ 2239358 (+)
CI01000057_02212256_02222966 NA coding upstream 26057 2212205 ~ 2223086 (+)
CI01000057_02198818_02199189 NA coding upstream 49838 2198588 ~ 2199305 (+)
CI01000057_02168933_02179593 MMP19 coding upstream 69117 2168933 ~ 2180026 (+)
CI01000057_02347155_02370642 PUSL1 coding downstream 96513 2347155 ~ 2370664 (+)
CI01000057_02395285_02396439 NA coding downstream 144346 2394598 ~ 2396561 (+)
CI01000057_02412538_02415631 NA coding downstream 160874 2411516 ~ 2415933 (+)
CI01000057_02416295_02420310 CDA coding downstream 165653 2416295 ~ 2420542 (+)
CI01000057_02548444_02558549 NA coding downstream 297253 2547895 ~ 2559692 (+)
G243858 NA non-coding upstream 3036 2245254 ~ 2246107 (+)
G243850 NA non-coding upstream 39901 2208935 ~ 2209242 (+)
G243813 NA non-coding downstream 271 2250913 ~ 2251451 (+)
G243803 NA non-coding downstream 4177 2254819 ~ 2257014 (+)
G243869 NA non-coding downstream 55815 2306457 ~ 2306733 (+)
G243871 NA non-coding downstream 57129 2307771 ~ 2308253 (+)
G243872 NA non-coding downstream 57786 2308428 ~ 2308707 (+)
G243558 NA other upstream 1290772 956063 ~ 958371 (+)
G243557 NA other upstream 1293948 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 1828633 417700 ~ 418655 (+)
G243975 NA other downstream 325811 2576453 ~ 2576852 (+)
G243991 NA other downstream 384595 2635237 ~ 2652560 (+)
G245231 NA other downstream 836454 3087096 ~ 3292562 (+)
G245401 NA other downstream 1286927 3537569 ~ 3538442 (+)

Expression


Co-expression Network