CI01000057_02043653_02103160


Basic Information

Item Value
gene id CI01000057_02043653_02103160
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2043503 ~ 2103654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02043653_02103160.mRNA
ATTTAAAAAGGTATTTTTATGGAAATATGTGTCTATATTTATAAATTACCAATGTATGTTTAGGTCATTTTGAAATATATCTATAAACAGTTTTGCCATGCGACACTGATTCCCCCCCCCCCCTTTTTTTGTCTTTAGGACAGTGCAACCATGCAGTTCTGTGCCAACAAATTGGACAAGAAGGACTTTTTCGGGAAATCGGATCCCTTCATGGTCTTCTTCAGAAGCAACGAAGACGGCACGTTTACAATCTGCCACAAGACAGAGGTGGTGAAGAACACCCTCAACCCTGTTTGGCAGCCGTTCACCATTCCAGTCAGAGCTCTCTGCAATGGCGACTATGACAGTCCCACACAGCACGTTCATGCAACGCCTGAAGCATCGAGAAACTCGGATCGACATTTTGGTTTGAGAACAATCAAAGTGGAAGTGTATGACTGGGACCGTGATGGGAGCCATGATTTCATCGGTGAATTCACCACCAGCTACAGAGAGTTAGCCCGAGGTCAGAGCCAGTTCAATGTGTATGAGAATGGGACACCTCTAGTATCTCAAGACTTAAGCACTCTAGAGATCGGACAGAGCTATCCCTGGGAGTGGAGGACCTTACTTAAAACCAGAGGTGGAGGGTACTACTCCATCTCCGACCCTGAAGATTCGCTAACGAGGGGAGCTAGTGAAGTGGTGAATCCAAAGAAGAAGATGAAGAAGAAGAAATATGTAAATTCGGGCACGGTGACACTGCTGTCATTCTCAGTGGAATCAGAGTCGACTTTCCTTGATTACATCAAAGGAGGGACCCAGATCAATTTCACTGTGGCCATCGATTTCACCGCCTCTAACGGTAAGCAATTAAGTGGAGAGAACGGTAACCCATCCCAGTCCACGTCTCTCCATTACATGAACCCCTACCAGATGAACGCCTACGCCCTGGCACTGAAGGCAGTGGGGGAAATCATCCAGGACTATGACAGTGACAAGATGTTCCCTGCACTGGGATTTGGAGCCAAGCTGCCCCCTGATGGACGGGTGTCTCATGAGTTTCCCCTAAATGGAAATATCGAAAATCCCTACTGTAATGGTATTGAGGGGATTTTGGAGGCGTACCATCAGAGTCTAAAGACCGTCCAGCTATACGGGCCTACTAACTTTGCCCCTGTTGTAAATCACGTGGCCAGGTACGCAGCTGCTGTCCAGGATGGCTCGCAGTATTTTGTGCTCCTCATCATCACAGATGGGGTCATATCAGACATGTCACAGACCAAAGAGGCCATCGTGAATGCTGCCAAGCTTCCCATGTCCATCATTATTGTTGGAGTTGGACAGGCTGAATTTGATGCTATGGTTGAGTTGGATGGTGATGACATCAGGATCTCCTCAAGAGGAAAATTAGCAGAGCGAGACATTGTCCAGTTTGTGCCGTTCCGGGATTACATGGACCGGACGGGAAACCACGTGTTGAGTATGGCACGACTGGCCAAAGACGTTCTGGCTGAGATTCCCGACCAGTTCATTTCTTACATGAAGAGCCGGGGAATCAAACCCAACCCAGCGCCGCCTCCGTACACACCGCCGGGACATACACACCACACACAGATCTGAGCTCCTGAACCTGCTCTCCCTGGAATCATGGGGTAGCTGTACCGGAGCTTTAGGGTTTAGCTCCCTGTCACCATGTGTTTGAACTCTCCGAGACACTCCGAGGTACAGTGGCGTTTCTGTTTGTGCCATTTATATTTTCTGCCCGTTTTTTTCTGGGAAGGACAGTGTGACCCAAGGGCAGCTTTTTTGTTTGTTTTGTTTAAAAATATCTATATCTTGGCCTGTGACTGTTTCTTATTTTGTGGATCAGTTGACAAGAGGACGAAGAGCCGGAGGAGGAGGAGGGTGATGTTTGTGGTTTCAACTTGTGCCTGTCTGTGACTGTCTCAGTGTTCCAGGACAAGTGTGCCCTAATCTGACATTGGACCTTACTCCACATCGGTATACTAGAGTGTGCGCGTTACGGTGACGTTTTTAGAGTCGTATCGCTTTCATTTCGTATCAGGTCAGGCTTGTGACGGTTTGGGTTTATTATGTCAAGCATCTCTTGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02043653_02103160.mRNA True 2096 mRNA 0.48 15 2043503 2103654

Neighbor

gene id symbol gene type direction distance location
CI01000057_01926510_01929865 NA coding upstream 113479 1926510 ~ 1930024 (+)
CI01000057_01859686_01900493 KIF21B coding upstream 142437 1859686 ~ 1901066 (+)
CI01000057_01780001_01798256 SRPK1, SRPK1B coding upstream 244856 1780001 ~ 1798647 (+)
CI01000057_01711126_01748095 MAPK14, MAPK14A, P38B, P38A, MAPK14B coding upstream 295008 1711126 ~ 1748495 (+)
CI01000057_01697652_01698656 B3GALT6 coding upstream 344486 1697652 ~ 1699017 (+)
CI01000057_02126499_02142817 TIMELESS, TIMELESSA, TIMELESS.S coding downstream 22845 2126499 ~ 2143124 (+)
CI01000057_02168933_02179593 MMP19 coding downstream 65279 2168933 ~ 2180026 (+)
CI01000057_02198818_02199189 NA coding downstream 95111 2198588 ~ 2199305 (+)
CI01000057_02212256_02222966 NA coding downstream 108551 2212205 ~ 2223086 (+)
CI01000057_02228717_02239180 NA coding downstream 124145 2227799 ~ 2239358 (+)
G243740 NA non-coding upstream 334027 1704632 ~ 1709476 (+)
G243733 NA non-coding upstream 390512 1582950 ~ 1652991 (+)
G243761 NA non-coding upstream 467951 1575119 ~ 1575552 (+)
G243760 NA non-coding upstream 469246 1574058 ~ 1574257 (+)
G243757 NA non-coding upstream 477784 1565412 ~ 1565719 (+)
G243797 NA non-coding downstream 2043 2105697 ~ 2111516 (+)
G243837 NA non-coding downstream 24836 2128490 ~ 2129226 (+)
G243850 NA non-coding downstream 105281 2208935 ~ 2209242 (+)
G243558 NA other upstream 1085132 956063 ~ 958371 (+)
G243557 NA other upstream 1088308 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 1622993 417700 ~ 418655 (+)
CI01000057_02395285_02396439 NA other downstream 290944 2394598 ~ 2396561 (+)
G243975 NA other downstream 472799 2576453 ~ 2576852 (+)
G243991 NA other downstream 531583 2635237 ~ 2652560 (+)
G245231 NA other downstream 983442 3087096 ~ 3292562 (+)
G245401 NA other downstream 1433915 3537569 ~ 3538442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003158 cpne5b coding NC_007122.7 CM002895.2 3005536 ~ 3195882 (+)