G243615


Basic Information

Item Value
gene id G243615
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1216702 ~ 1221552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU276492
TTTGCTGTAACTGTCACAGGTATAAAATCCACCAGTTTATATCCCTGGAAAAAGAATGAACCGACTTAGAACCAAAACAAGGAGCAAAACAAAAAGACATGTAGCCAAGCACAGAAAGATTGAAGTCATAAGTGTCTCATGCACCACTGACACAAAAGACTACTTTTAAAACATAAAATTTAGGTACCGAACCTTACTTAAGACACAGTTGGAAATGTGGTCACTGTGATAGTTCGGCAGTCATGTTTTCACCACAACCACGAAAACAACCAAGCAACAAAATCTTTACACTGTTACCTCATTTTGATGAGCACAAATAATTCACATGAAAGAAAACTAAAATTCTCCTCTTACCTACCAGTCTGGCATGTTAAACACCTTACTTTGGTAGCTGTTTCTCGCTAGTCTTACAACAGCAATCATCTGTTCTCAATAAGACTGCTGGCGATCCCAATAAGCTAGCCTCTCAGCTGGCTCATCCCAATGGCTAGCCTCTCTTCGACGGAGCGCTTCTCAACAGTCTCTTCTCTTTGGCTAGCCTTTAAGCTGGCTCCTTCCTCCTTTGCTGGCACTTCTGACCGTTTACGTGCGAGATTGCCTTCTGGTGGCAATTCAGAGTTGCTAAAAATCCTCTCATGGATTTCATTCACCACAGGAACTCAAACAAAGAAGCATCATTTGTCCAAAAGATGAACTACGTGCTACCCACATGTTGCACAATACAAAAACACTAGAACGTGTGCTAGGCCCAATTATAAAAGTAAATGAGCAAGCTGATTAAGGTTTAGCTGAAGCTAAATTTGTTAATGCAATCTGATTACTGCCACTTCACATGGAAGTTGAAACGGACCAACATTATATTAATTATGCAGCAACCAAGGCTTATAGCTTTCAATGTGTCTTTAGGGTAAAGCTACAAAAGACAGAGATACCCAACGGCATCAGAATACGCTGTGGGTCCGTTGCGTGAAACACAATCATGCAACTGGGCGAGTACTGAAGAACATCATTTACCAAATCAAAACACTGACGAATGCAATTAAATAAAAAAACTGGAGCGGTTTATTTAATCTTGATTGGTGACTGTTTACATTTAAAAAAAGAAAAAGAAAGAAAAGCAAAAGACAGACACCCTACTGGTTCAAGAGAAAAGCCAACACAACAATTAAACCCTGCATAAAACCTCATTGGAATGCTTTGCACTTCACAGACAAAAAAAGGGAAAACTACAAACTAGTAAATGTCTTCCAGGACAAGAGTACTTTTGAAACGTTCCTTTTTTTCTTGTTTTTTTTTTTTTTTTTTACAACTTCAAGACCCCCAACCCCATTCCCACATGATTTTCCTCCCCTATTGAACTCGTTCTCTTCGCGTGGCAGACGTTAAAATCGCCACCACGCTGCTTGGCTGGGCAGATCTAGGTGTAAACCTGCTTGCTTCTCTCCTTTCCCTGTCATCTCTCTCTGGCTCTCCTCTAAGTACTGTGGCCTGTTGGACAATACGGAACATAAATTCAGTTACACTTTGCAACCTTGCTTTGTCGTTATCAAGAGCTGAACTGGAGGGGAATGAGTAGTAGTAGCACAGAAGCAAACCTTCAGGTCAGCTAAGACTGCATGGTTAGGACAATGAGGATGAGTTTGCATGTGCTGCAGCCAGAAGATTTGGAGAGCAACTCAAATCAACATTCGTCTGATACTGAATCTTAGCTTAACAAGATTTGAAGGTTTGCTGCTGGATCCCCTGCACTGAAAACTCAATGGTTTTACTCATTTACCGACCAATTGAAGAGTGATTAGGGGCTAACATTTACATAGGTTACGCATCTTATGAGATGTTTGGATGAGCTAAAACAAACTAATGGCTAACTTCAGAGCCCTTTTCCATAAGCGGGGCAGTTCCTTACCCTGGAGTCTAAAACCTTCGCCCGCCAGAGCTGCCTCCATAACCACCACTGGAGCCTCCTCCATAACCACCTATAAAAAGAAGTATGATCGAGCTATGACAAAATTTCAATCATAATAGTTCCATTATTGATACTTTTGTAACTTCAAAACATCCCAACTTAGAGCCCTACACCGTGTCCTAACCACATGCGACACGTGGTAAAAGGTATCTTTTCCATTTTAACCAGACTTTTTGTCTGAACTAGCCTCGACGGCAATGTGAAAGGAACGACAGGGGATTCTCTTTTAAAAGTGGTTTGTATTTCTGCGACGTCCCTGCTGGAACAACAACATACAAAGTATGACAATGATAATATCAGGTACTGATTAAATTCTTTTAACATTAAATAAAGCAGATAAAGTGAGTTTGACTATCATTTAGTGTGACCGTTAGAGCCATACTCAAAGTGTCAATGGATAATTCACCTCAGATACTGAAAATAAAGGAAACAAAAACAAACAAGTGTATTCTATGACAAAGATGTTTTCAGTCACTCATTACGTTTTTTTTAATAATGCTAAAATAATGTAACATTTGAATTTGATAATGTGCGAGTGCAGTGCGCTTGCTGAAAGAGCTCCGCCCACACCAATTCTTCTGATTGGCTGTGATTTTTGACTGATTTTGTCATGTCCTGTAGTTGCGTCTCGTCTGCTGTAGACGGACAAATTGCCTGTTGCTGGAATTTTATCGCATCTGATTAAAACACGGAGTTAATGCAACAGTTTGAATTCAAATATAATGTTATCATACCATGTACAACTCTAAAATATTCACTCACCACCATATGGGCCACCGCCGCCGCTCCTTCCACCACCTCCGTAGTTTCCTCCCTTCATTGGGCCATAGTTAGAGGAAGACTGGTTGTAGTTGCCAAAGTCATTGTAGTCTCCACCACCTCCACCTCCAAAGTTGCCTCCTCCTCCAAAGTTGCCTCCACCACCATTGTTGTAGTTATCATAGCCGCCACCGCCGCCACCATAGCCTCCACCCTGGTTTCCATAGCCACCACCGCCGCCGCCGCCACCTCCATAACCGCGGTTACCACCATAATTAGGTCCGCCTCCACCATAGCCGCCTGATAAACAGATGGGAGATAAATCAAACATCATCATGGAAACACTGTTTAATTGTCAAGTGTAACGTGAATCACATTTTTTAAAGCCTATTGATTTACCATTCCCTCCGTAGCCATTATATCCACCATCACCTCCTCCATAACCTCCTCTTCCTCCACCGCCTCCTCCTCCTCCATAGCCACCTACAAATGAAAAACATTTCAAAATTAAAAACTCATGAAGAACACCGTAGACCAGTAGTTCTCAAACAGGTGGGTCAGTGTACCACAGAATTTGTCCTTACAACCTAAATAACCTTTTCCAATTATTCCATGAAATATGCATGGTACAAAATTGTATTTTAAAATGTTAAGATTAAGGACTAATTAGGGTTGTCGCGATAACCACAATACCACAGGAGGAATGCAAGCAACCGCAATGTTCATGTTTTCTTTTTTTCATAAGGCTTCGCCCTTCTCGCTTTACAATTCATGCATGTGTATTGAATGTCAAGTTAATAATGATATCAAGTGAAGAATCCAATTTTTTCCACCAGCTGGCTCCTTACTAATTAAGAATCTTTGTACCATTGTGATTTGTACATAGGCTCCGTAGAATTGCACTAACCAAGCCTAAACAGACAGCGAGTTTAATGACTCAAAGACACTCCCTTGCTGCCACCTAGTGCCATAATGTAACCGCTCTGGGGTGCGTTTCCCGTATAACGATGTAACTCGCTGCTTCACCACCATAGTACTATGCATCGTTGAGCAAATCAACTACCTAGTCACGACTGTTTCCCGAAACCATATTGTTGCAAACCTGTTCAGCCACGTTGGTTAATGATGTCACGCAGGTGGTGGAATAATAACTTCTTTAAATTTATCCATTTGAGATCGAATTAATGCTAGATTTTTGCTATAAATTAATGCCATGTCATCTGAGGGCTAATTCTCATTTTTCTCAGTTATTTTGCTGTATTTCCAGATTCAATCATAGGCTCGTTCTTATGTACTAGATCATGTACACACATGCGCACTCTTCAAAAACGGTGCTTTAAATCTCTTGACATACAGTAAGATATAGATTGTACTGAATGTCAGCTTGCTTATTTTGCTCAAGATAAGGATTTATTAAGTCCACATTTCATAAAAACAAGAAACTATGTTTCTAACCACAGATCGAGAGCTGTCGTTCCAACCATGCAACTTTGCAATGCTGTTTGTGAATGTTCGTTGGAACTATGGTTTCAGGAAACACAGACTCGTGGAACTGTGCTGATAACAACGGAACTTGTGACCATAGTTGGCTAACGATGCTTTTGGGAAACGCACCCAATTAGTTTCAGTTTTATTGGTTACTGATTATGTTCTCGTTTGTTGCTATAGCTATGTATTAGCTTCACATGTGTCTAGTTTACTTTCCTTTGTTTATACCCCAGTTTATATAGCCCTGCTTTTCAGTTGTTCTTGGTCAGTTCTTGTTTATGCATTGTGTGGTTTGCGTTGTTCTCCATCGTGTTCATTCAGTGTGTTTGGATTATCATCACGATATTTAGCCACTCAAAATCACTGTTAGGAAAAATTCCTTCCCTGTGACAGCACTAGAACTAATTTTGTACAATTATTCACATTTAAGGATGTGCTCAATTGTATTTTGAGAAAATGTGTGTGTGTACTTTAAATTTTTTGTTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU276492 True 4701 lncRNA 0.40 2 1216702 1221552

Neighbor

gene id symbol gene type direction distance location
CI01000057_01177196_01178597 NA coding upstream 38035 1176993 ~ 1178667 (+)
CI01000057_01165517_01166589 HOXC6BA, HOXC6B, HOXC6 coding upstream 49444 1165179 ~ 1167258 (+)
CI01000057_01139343_01141069 HOXC11B coding upstream 75264 1139039 ~ 1141438 (+)
CI01000057_01131299_01132358 NA coding upstream 82474 1129411 ~ 1134228 (+)
CI01000057_01115280_01118124 NA coding upstream 98393 1115280 ~ 1118309 (+)
CI01000057_01361967_01364527 NA coding downstream 140338 1361890 ~ 1365466 (+)
CI01000057_01379483_01380217 NA coding downstream 156768 1378320 ~ 1380253 (+)
CI01000057_01382893_01387090 NA coding downstream 161197 1382749 ~ 1387130 (+)
CI01000057_01403147_01424851 NA coding downstream 181595 1403147 ~ 1425333 (+)
CI01000057_01444461_01445905 NA coding downstream 222428 1443980 ~ 1446104 (+)
G243618 NA non-coding upstream 6275 1208238 ~ 1210427 (+)
G243645 NA non-coding upstream 9649 1206834 ~ 1207053 (+)
G243605 NA non-coding upstream 51832 1160761 ~ 1164870 (+)
G243628 NA non-coding upstream 66633 1149859 ~ 1150069 (+)
G243656 NA non-coding downstream 60929 1282481 ~ 1283909 (+)
G243657 NA non-coding downstream 62574 1284126 ~ 1285779 (+)
G243662 NA non-coding downstream 143985 1365537 ~ 1365918 (+)
G243700 NA non-coding downstream 161873 1383425 ~ 1383677 (+)
G243558 NA other upstream 258331 956063 ~ 958371 (+)
G243557 NA other upstream 261507 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 796192 417700 ~ 418655 (+)
CI01000057_02395285_02396439 NA other downstream 1173046 2394598 ~ 2396561 (+)
G243975 NA other downstream 1354901 2576453 ~ 2576852 (+)
G243991 NA other downstream 1413685 2635237 ~ 2652560 (+)
G245231 NA other downstream 1865544 3087096 ~ 3292562 (+)
G245401 NA other downstream 2316017 3537569 ~ 3538442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G93102 NA non-coding CM030131.1 CM030131.1 23330734 ~ 23330972 (+)
tiger barb (Puntius tetrazona) G78484 NA non-coding NC_056709.1 CM032078.1 1558860 ~ 1562656 (+)