CI01000057_01379483_01380217


Basic Information

Item Value
gene id CI01000057_01379483_01380217
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1378320 ~ 1380253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_01379483_01380217.mRNA
GTATAAATGTCTGAGGAGTAAAAGGCCTCTTCGGATGCTGCCTCCATTAAGCGTAGAAGAACAGTCTCTATTGCAGGAGTGGAGAGTGGAAGGAAGACTGGCAGACGATGGATCGTGGGTGACAGTAGCTGGAACACAGAAGACGGATGACACAGGCAGGTAACGGGGAAGTAGTCCATAAGGCAAGTGAATACATAGAGACATCCATAGACGAGACCAGACAATGTGGAGGAGTGAACGTGGGTCTTAAATAGTGGTGCTGAAGAGTGATAACAAAGGTGATGACTTTCAGGTGCAGGTGATTGGTGAGAGAGTGCAGGTGAGGAACCAGAGAGATGCTGGGAAATGGAGTCCGGGGAAGGTGATACAGACAGTGACTGTGACAGTTACGTTTGCCTTCCGTGAGACTTTATTTATAACTACAAACTGAGCCTCGACAAAGAACAACCACAAGGTAGTCTTCTACGTCATTCCTGAAGAACTTCAACCTGCCGGCGGGTGAGTATCTTATGGTTTAGACTAGATTTGACTTTCCTTACCCTACCTGAATAATCCTAGGGTTAAAAGGTGTACTATAAATGATCACACCGACTAACCTGGCGCCCAACGTGAGTGGCTTGAGGTTTGAGTTTTAAGTTGAAAGTGTATAAACCACAATGAAGAGCTGCCTGTAAGACCCACGTATACCAATCCAGAAAGGATTTGGTTAGATACTAGTCTAGAGAGACTTAGTATATTCCAGTCCAGAGAAAGGACTAAAGGGCCAGGAAACGGGATCGCTACCCGTGAGACCTAGAGAGGGGTCTATTGAGTTGAAAAACCTGTAGTAGGGGACGCCCTAGTATGGCAGGTAAAAAAGCCCAGAGAGATCCAGTAATATCTTAATTCAAGCCTACACCTGGGGAGACCACCGGGTAAAAGCATGGGAGAAAAAGGCCTTAAGGGCAGAGACCTTGGTCCAAGAGATAGAGCCAGGTCAGATACTTTTATGGTTACCAAGCCGAGATGGATTGCAAAGAGGTCATTTTCAGGAATCTGAAGTTTCTTTAGCAGTCATGCAGTGGGCCATAGAATTAGGAAGTCACTATAGACAGGAAGTGGCTATCCAATGCAAAACCATCAGAGTCAGAGGGCATTATGAGCACAGTGCGTAAAAAAAAAACATGGGGAAAACAAAGCTGTATACTATGAGTGGAAAAAAATTAAAGAAATCTCAGGGTGAAGTTCCAAATATGGAGAAAGTTAGGATATACCGGGAAGCAATGACAGACTTTCAAAATGCAAATGAAATCCTTCTTACTTTACCACCAGAAGAGGAAGATAAAGATAGTGTTATAACCATAGCAGAACCGCACTTACCTAGGTCTGCAGTCACAGAAATACACTTACAGCAGATAATGATCCGGATCTATGAGGGTTGGATGGAACATACATCTGAAGGCATGGCAGTAGTGTATGGAAATCCACAGATGATCAAGGAAAAAGGAACAGCTGGAGCAGTTTTTGGATGCTTAGGGGAAGACCCTCTTAAAGAGATAGAGAATATGAGAATCAGATTAGGTCCTCAGCAGGCAGAAACCATACGAATTTTTAGAGGTTCTCCAAAATGGAATAGTGTGGCACATGTAGTACTAACCAATAGTAGAACACAGACATGTACAGAAGAACAATCTGGAGAAGAGACTAGATTGTTAATAAAAAAAAATGTAATTAGAGAAGCTAACGACAGAGGTGATAAAGAAATACATATGTCCCCAGTAGTGACAGAACAATGTCTGGAGGGACTCGTAGCTGGAATAATAGAAATGTCCCAAGAAATTCAAATGACTATAAATCTCCTCGTTAAAGAGAGAGATCAAGAGAAAATAAAAAATATTACAGCAAAAAGAGAAGTATGAAGTAAAGCCAAGGCTAGCAGAAAACATAAGTAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_01379483_01380217.mRNA True 1934 mRNA 0.43 1 1378320 1380253

Neighbor

gene id symbol gene type direction distance location
CI01000057_01361967_01364527 NA coding upstream 13372 1361890 ~ 1365466 (+)
CI01000057_01177196_01178597 NA coding upstream 199653 1176993 ~ 1178667 (+)
CI01000057_01165517_01166589 HOXC6BA, HOXC6B, HOXC6 coding upstream 211062 1165179 ~ 1167258 (+)
CI01000057_01139343_01141069 HOXC11B coding upstream 236882 1139039 ~ 1141438 (+)
CI01000057_01131299_01132358 NA coding upstream 244092 1129411 ~ 1134228 (+)
CI01000057_01382893_01387090 NA coding downstream 2496 1382749 ~ 1387130 (+)
CI01000057_01403147_01424851 NA coding downstream 22894 1403147 ~ 1425333 (+)
CI01000057_01444461_01445905 NA coding downstream 63727 1443980 ~ 1446104 (+)
CI01000057_01451283_01464669 NA coding downstream 71030 1451283 ~ 1464669 (+)
CI01000057_01510783_01522965 UBE2V1, UBE2V1.L, UB2V1 coding downstream 130530 1510783 ~ 1523768 (+)
G243662 NA non-coding upstream 12402 1365537 ~ 1365918 (+)
G243657 NA non-coding upstream 92541 1284126 ~ 1285779 (+)
G243656 NA non-coding upstream 94411 1282481 ~ 1283909 (+)
G243615 NA non-coding upstream 156768 1216702 ~ 1221552 (+)
G243700 NA non-coding downstream 3172 1383425 ~ 1383677 (+)
G243703 NA non-coding downstream 5566 1385819 ~ 1386107 (+)
G243706 NA non-coding downstream 8501 1388754 ~ 1388956 (+)
G243709 NA non-coding downstream 10469 1390722 ~ 1390922 (+)
G243717 NA non-coding downstream 60785 1441038 ~ 1441280 (+)
G243558 NA other upstream 419949 956063 ~ 958371 (+)
G243557 NA other upstream 423125 954843 ~ 955195 (+)
CI01000057_00417827_00418207 NA other upstream 957810 417700 ~ 418655 (+)
CI01000057_02395285_02396439 NA other downstream 1014345 2394598 ~ 2396561 (+)
G243975 NA other downstream 1196200 2576453 ~ 2576852 (+)
G243991 NA other downstream 1254984 2635237 ~ 2652560 (+)
G245231 NA other downstream 1706843 3087096 ~ 3292562 (+)
G245401 NA other downstream 2157316 3537569 ~ 3538442 (+)

Expression


Co-expression Network