CI01000057_00579799_00588289


Basic Information

Item Value
gene id CI01000057_00579799_00588289
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 579799 ~ 588713 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00579799_00588289.mRNA
GACTTATATACAGCAGGAGCTGAAGGTCAAGACTCTAGAACAACTCTGGATGACATGATGCATCTAAACTTCACAACGGATCGAACACACAGATCAGACTTAAAGTTAGAAGAGGACATCTATACAGCTGAAGATGAAAGTCCACCACCTTCAGCACCACTGGATATTGCCAAATTTATAATCAAAGTGGACTGGAGAGAACCATTTCCAGACAGATGGAGAGCAACATTACAGAAAGCCCTTCAGAGCTGTTTGTCCAGACTGGAAGGAACAGCATCTGTCCATCGCCTTACACTCATGGATGATCCATCCTGTGCAGAGGTGCAGATAACACCATCAACAGCTCTAGAAGTGTTAAAAAAGCACACACCTATATCTTTAAAGTTTAAAGATAAGGAAGGTAAATTTAAGGAAGTGGCTGCACGGATTTGTCTGGATGAAGCACGTTCTGTGACTGTTCCACAAAAGTCCATGCTAAAGGAGAACAGAGCTCCATCAACAAAGGTGATAGGCTCTGTGCATAATGTTGAGGATGTTGCTGCATCTATTAGAGCTCCAAATAAAGCTGAGACCAGTAACACTGATAAAATGACACCTGAGACACCAGCTGGATTCACCCTCCCTCTCTATCAGTTCTGGTACATGCATCACGCTTACAGAAAGGAGTTAGAACAATTTGAGAAACAGCATGGAGTCCCTATTTGTGCAGAAGTGTCCGTCTCAATCAAACATATCCAGAGATCAAGCCCTGATTTTGTGTCTAAAACCACTGATGAATTTCAGACACTTGTTCAGAGATGTACGGATAGTTTTGCTGATGCTGCCATTAGTCATAATCACATGGATTCAGATATTGTAAAGCAAGCCCTTCGTCACATCCAGTCAGAGGAGTCAAAGTTGATGTTCACCATGTCTGCCAGTAACTGCCTGTTCTTTGGACAGAAGAAATTTACAGATGTGATTAAGAGAGAGGTAGAAGAAACGAGAGTTGAAAGCAGATTCAGTGACTCTAGACCACCTCTGAATGACAAGATGCCTCAAAACATCAAAAAAGGACGGCTATACTTACAGTTAGAAGAGGACATTGATGCAGCAGCTGATGAAAAGCAACAACCTTCAGCACCACTGGATTTTGCAAAATTTATAATCAAAGTGGACTGGAGAGAACCATTTCCAGACAGATGGAGAGCAACATTAGAGAAAGCCCTTCAGTTTTGGTTGTGCAGAATGGAAGGAAAATCATCTGTCCTCAGCCTGGAACTCATGGATGATCCATCCTGTGCAGAGGTGGAGATAACACCATCAACAGCTCTAGAAGTGTTAAAAAAGCACACACCCATATCTTTGAAATTTAAATCTAAGGAAGTGGCTGCATGGATTTGTCCTTATGAAGCACGTTCTGTGACTGTTCCACGAGAGTCCATGATAAAGAAGAACAGAGCTCCATCAACAAAGCTGATCAGCTCTATGCCTGTGACTGCAGCATCAGAAGACACAAATAATGTTGAGGACGTTGCTGCATCTAATAGATCTCTAAATAAAGCTGAGACCAGTAACACTGCTGGAATTACACATGGGACACCAGCTGTACAGACTGTACCCTTCTTTCAGTCCTGGTACATGCATCACGCTTATGGAAAGGAGATAAAGCAAATTGAGCAACAACATGGAGTCTCTATTTGTGCAGAAGGAGATGTATGGATAGTTTTAGTGATGCTGTTTTTTGGACTGAAGAAATTTATAGATATAATTAAAAGAGGGGTAGAAGACACAAGAGTGAAAAAGCAATTCAGTGACTCTAGACCAACTCTGAAGGACATGAAGCATCAAAACTTCCCAATGGATCAGCTATACTTGCAGCCAGAAGAGGTCATTGGTGCAGACGGTGATGAAAAAACACAACCTTCAGCACCACTGGATATTGCCAAATTTATAATCAAAGTGGACTGGAGAGAACCATTTCCAAAGAGATGGCGAACAACATTAGAGAAAGCCCTTCAGAGCTGTTTGCTCAGACTGGAAGGAAAATCACTTGTCCTCAGCCTGGAACTCATGGAGGATCCATCCTGTGCAGAGGTGCAGATAACACCATCAACAGCTCTAGAAGTGTTAAAAAAGCACACACCTATATATTTGACGTTTAAAGATAAGGTATCTAAGGAAGTGGCTGCACGGATTTGTCCTTATGAAGCACGTTCTGTGACTGTTCCACGAGAGTCCATGATAAAGAAAAACAGAGCTCCATCAACAAAGGTGATCAGCTCTATGCCTGTGACTGCAGCATCAGAAGACACAAAAAATGTTGAGGACGTTGCTGCATCTATTAGAGCTCCAAATAAAGCTGAGACCAGTAATACTGCTGGAATTACACATGGGACACCAGCTGTACTGACTGTACCCTTCTTTCTGTCCTGGTACATATATCATGCTTATGGAAAAGAGATAAAGCAAATTGAGCAACAACATGGAGTCTCTTTTTGTGCAGAAGTGTTAGTCTCAATCAACCCTACTGAGAGATCAAGCCCTGATTCTGTGTCTAAAGCCTCTGAGGACTTTCACAAACTTGTTCAGGGATGTGTGGGTAGTTTTAGTGATGCTGCCATTAATCATAATCACATGGATTCAGATATTGTGAAGCAGGCCCTTCGTCACATCCAGTCAGAGGAGTCAAGGATGATGTTCTCCATGTCTGCCAGTAACTGCCTGTTCTTTGGCCCGAAGAAATTTACAGATGTGATTAAAAGAGGGGTAGAAGACACAAGAGTGGAAGGCCATTTCAATAACACATCAAGTCAAATGGATGTAGACAAAAACTTTTCTCCACAAATCAGGTCTTCATTGGACATGGACACAAAGGACCTTCCAACTCAACTTGAGATGGACAAGGTTCTTTGGGATCTGATGAAACTTTCCTTCAAGGATCAATTATCACAGCTTGAAACAAAGTACGGAGTGTCATTTAATGAAGAAAAACTGCAGAAAAATTTAACCATTAAAGTTCAAGCTCGATCCAAAGGACTTCAGTGTATCAATCTTGAAAGTCATGCCATCAGAGCTTTAACACAACTCTACCAGAAACTTGCATCAGCAACTGTCACCTGTGAACTCAGAAACCCTACAGACGCAACTGTTGTGGGATCAGTAGTAGAGAAACTTCAGCAGCAGCATCATTGTGTTGTTGTAGATGATGTATTGACTCACTGGAGGCTCGTTGGACTGCCAGAGCACCTCGGTCCTGCCATTGCTGAAATTGAGAAGATGCTTCAGATGAGTGTGTTTCATGACGAGATGAAAAAATCGATCGGTTACTCAGGGGACATTCCTCACGCAAGAGGAATCAAATGGAATCAGATGCCTGATTATGGACCTGGAGGAGATAAATGAACAAGAACAAAAAAAATCTCAGATATGTGCTTAACTTTTAGTCATTGAATTATTTGTATGATTTATGACTTCTGGTTGTTGATTTACATATTTCTGTGAACTGTGTATTCATTCTTGACTTGAGTTTAGAACAGAGATCTCCACTGTGCCTCAACAAGAATAGATAATATTCAGGTGGCATAGAAGGGTGAAAAAACGATGTGATTGATGCAGCAAATAACAAATAATTTTTTTTAATTTTTTTTTTATAATGTCTTATATTTTCTACTCTTCGTTCTTCATGCTCATCTTTGGAAGACACTTAGTTTAAGGAAAGGTACAAAAGTGTCGCATTTATTTTGTTTGTCAACCATTTTTAGCTTTAAAAGATTACAATGAATGTCAATAATGGAAATGTTCTTGTAACCAAAGCCTTTATAATGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00579799_00588289.mRNA True 3808 mRNA 0.41 11 579799 588713

Neighbor

gene id symbol gene type direction distance location
CI01000057_00522824_00529929 TMBIM6, TEGT coding upstream 49226 522358 ~ 530573 (+)
CI01000057_00501025_00517941 NA coding upstream 61808 500868 ~ 517991 (+)
CI01000057_00485167_00494040 NA coding upstream 85234 484167 ~ 494565 (+)
CI01000057_00457954_00458159 NA coding upstream 120985 457954 ~ 459865 (+)
CI01000057_00452440_00452721 NA coding upstream 126634 452363 ~ 454003 (+)
CI01000057_00603519_00620072 NA coding downstream 14733 603446 ~ 620122 (+)
CI01000057_00631558_00652724 NA coding downstream 41818 630531 ~ 652734 (+)
CI01000057_00704214_00707893 NA coding downstream 115416 704129 ~ 707903 (+)
CI01000057_00713870_00835798 LRP1 coding downstream 125110 713823 ~ 836026 (+)
CI01000057_00852993_00854987 NA coding downstream 264280 852993 ~ 855169 (+)
G243514 NA non-coding upstream 8891 570530 ~ 570908 (+)
G243509 NA non-coding upstream 16760 562812 ~ 563039 (+)
G243434 NA non-coding upstream 82473 496744 ~ 497326 (+)
G243477 NA non-coding upstream 119934 420836 ~ 421940 (+)
G243406 NA non-coding downstream 280201 868914 ~ 869972 (+)
G243412 NA non-coding downstream 291793 880506 ~ 887593 (+)
G243432 NA non-coding downstream 306682 895395 ~ 898119 (+)
G243565 NA non-coding downstream 381678 970391 ~ 970672 (+)
G243574 NA non-coding downstream 412415 1001128 ~ 1001330 (+)
CI01000057_00417827_00418207 NA other upstream 159289 417700 ~ 418655 (+)
G243557 NA other downstream 366130 954843 ~ 955195 (+)
G243558 NA other downstream 367350 956063 ~ 958371 (+)
CI01000057_02395285_02396439 NA other downstream 1805885 2394598 ~ 2396561 (+)
G243975 NA other downstream 1987740 2576453 ~ 2576852 (+)
G243991 NA other downstream 2046524 2635237 ~ 2652560 (+)

Expression


Co-expression Network