CI01000057_00522824_00529929 (TMBIM6, TEGT)


Basic Information

Item Value
gene id CI01000057_00522824_00529929
gene name TMBIM6, TEGT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 522358 ~ 530573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00522824_00529929.mRNA
ATATATAAGCTCCAACAACTTTTAAAATATTCAATAATATTTTCTAAAATATTGCAACTCTACAATTTTAAACCTAAATTATTTTTAATTATTTTATTATTAATTATTTTTAATTATTACAATGTTGTTGTGAAATGGCGAAACTATGTAAAAAATAATAAAGCAAACAGATTTATAATCTTTAATTTACATAACACAATGCTTGTGGAGCCCCTTAATTAAAACTTTTATGTGTTTTCTTTATTTTATTTTTTTTTTTTTCCTTTTTAAAATTTGTTGTAGGCTACAACTTGTTTAACATGCCTGATGTTTCAATTAAAAAATAAATTGACATTTCCTACAAGGTTAGTTCAGGTTGTAAAATTCCTTGCGACCCCCAAAAACTTAATATTTATGAATTAATAATTAATGATATATGCTTGCAAAACAAATAAACAAACAAATCATTAAATAAAACTTAAAAATAATGCATAATACATGTTTCAAGGTGTTAGTCAACATCATTGCACTCTGGTCCAGTAGTTGGCGAGGTTTCTCCAAAGTGAGAAAAAGCGAAGAACAGCATGCGCGTGGCGTCATCACGTCGGTGACGTCGCGTTGTTTTGCAAGCGCTGTACGTGACAGGGAGGCGTTGAGACCAAATCCACAGGCCCTCAGCAACAGACGACGGGAAGAGACACACTTTCACATCTTATGGAAACGGTTTAATGCGATTTTCTGTCGAGCACGACCTGACTTCACTCGCTGTTCGTTTAAAGTAACGTTACACAGTCGGCTCTGTGTTTATTACACGGAAGCTCATATGTGGGTTAAACTGATGACCGGACTTTTATTCGGGTCACTTCAGGGTAAAAACACCTCCAAAAAGTACATAATGTTTCGCAGTGAACTTTCAAAATTACATAATTTCCTGCAAGCCTTTCATAGTGACAAGAGTTCAGCTGATAGTTCATCAGGGATCATTCCAGTGTTTTCCACAGGTCTGGATTATACTTGTGGTGTTCAAGACTGCTCTCGCTCGACTCAGCAGCACCTGAAGAATGTCTACGCCAGTCTGGCAGTGTGTATGCTGGTGGCGACTGCCGGCTCCTACATCTATGTCATCACAAGACTGTTTCCGGGTGGGCTCACCATGATTGGGTCACTGGCTATGATGGGTTGGCTTGCCATGACCCCTCACAGCCCTCAGACGGAGAAGAAGAGGTTGGCCATCCTGGCTGCTTTTGCTTTCTTCACAGGTCTTGGACTTGGCCCGCTTATTGACTATGTCATCAGCATCAACCCAAGTATCATCGTGACTGCCTTCCTGGGCACCTCTGTCATCTTCGGCTGCTTCACGTTGAGCGCGCTTTATGCCCAGCGCAGAAGTTATCTCTTCTTGGGAGGCACTCTGATGTCTGGCCTGACTGTTCTTCTGCTCGTCTCCTTCCTCAACATGTTCTTTGCCTCAGAGCTAATCTTTAAGGCTCACGTGTATCTGGGTCTGGCCATCATGTGTGGCTTTGTGCTGTTTGACACTCAGCTAATTATTGAGAAGGCAGAAATGGGAGACAAAGATTACATTTGGCATTGTGTCGACCTCTTCCTGGACTTTGTGACCATCTTCAGAAAGCTTGTGATCATCCTTTCTATGAATGAGAAGGAAAAGAAGAAGGAGAAGAAGTAATTTTCAAAAGAGTGAAAACATCTGTGAGCTGAACACATGTCAGCAGCTTCATTGTGAATCTGATTACATAGTTTGATTACATTTTATGTGATTTGATATGGTGTCTTAACTTTATTTTTGAAAATTGTTACTGGGCTTTGAGTATGTTGTCAGGATAGTGACCTAATGTTGTTTGACTGTAGATTTTGAAGTCTTATTTAAAGCTTAAGTTGATCTTTAATTTCTTTGACTTACTGCAGAATTTAAAAGTCTGTAGAAAAGGAGTTTCATAGGAGTCTCATAAAACATTTGAAATGAGTATCTGATTTAATATTGTACATACAATAGAAAGTTTGAGTGTAATTGAGTTGTTACTGCTAGATAACAGAAGACTTTCTTACCCCACACTCTGAACAATATCAAATCATATATCATAAATACCTTAACATCGTTGTGCTCCGCTAAACTGCTTTTTTGTGGTTATTGCGTTAATATTTCATTGATTTTCTTTTTCTTCTTTGTTGCCAATGTCAGACTAGATTTTTGTAGCTGCTGTTAATGCCAATTTTATTTAGATTCAAGGCTACCATTGTTAATGCATTTTTCATTGAGTTCACAGATGAGATTTATTTTATTCATGAATATTGTGCATATTGATTAAGTCA

Function

symbol description
tegt Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM6 (transmembrane BAX inhibitor motif containing 6).
tmbim6 Enables endoribonuclease inhibitor activity and ubiquitin protein ligase binding activity. Involved in several processes, including negative regulation of RNA metabolic process; negative regulation of intrinsic apoptotic signaling pathway; and response to L-glutamate. Acts upstream of or within negative regulation of calcium ion transport into cytosol. Located in endoplasmic reticulum membrane and mitochondrial membrane. Biomarker of cervical squamous cell carcinoma and prostate carcinoma.

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00522824_00529929.mRNA True 2310 mRNA 0.38 11 522358 530573

Neighbor

gene id symbol gene type direction distance location
CI01000057_00501025_00517941 NA coding upstream 4367 500868 ~ 517991 (+)
CI01000057_00485167_00494040 NA coding upstream 27793 484167 ~ 494565 (+)
CI01000057_00457954_00458159 NA coding upstream 63544 457954 ~ 459865 (+)
CI01000057_00452440_00452721 NA coding upstream 69193 452363 ~ 454003 (+)
CI01000057_00435808_00442819 NA coding upstream 79520 435296 ~ 442838 (+)
CI01000057_00579799_00588289 NA coding downstream 49226 579799 ~ 588713 (+)
CI01000057_00603519_00620072 NA coding downstream 72873 603446 ~ 620122 (+)
CI01000057_00631558_00652724 NA coding downstream 99958 630531 ~ 652734 (+)
CI01000057_00704214_00707893 NA coding downstream 173556 704129 ~ 707903 (+)
CI01000057_00713870_00835798 LRP1 coding downstream 183250 713823 ~ 836026 (+)
G243434 NA non-coding upstream 25032 496744 ~ 497326 (+)
G243477 NA non-coding upstream 62493 420836 ~ 421940 (+)
G243415 NA non-coding upstream 117689 400191 ~ 404669 (+)
G243411 NA non-coding upstream 321680 194141 ~ 200678 (+)
G243509 NA non-coding downstream 32239 562812 ~ 563039 (+)
G243514 NA non-coding downstream 39957 570530 ~ 570908 (+)
G243406 NA non-coding downstream 338341 868914 ~ 869972 (+)
G243412 NA non-coding downstream 349933 880506 ~ 887593 (+)
G243432 NA non-coding downstream 364822 895395 ~ 898119 (+)
CI01000057_00417827_00418207 NA other upstream 101848 417700 ~ 418655 (+)
G243557 NA other downstream 424270 954843 ~ 955195 (+)
G243558 NA other downstream 425490 956063 ~ 958371 (+)
CI01000057_02395285_02396439 NA other downstream 1864025 2394598 ~ 2396561 (+)
G243975 NA other downstream 2045880 2576453 ~ 2576852 (+)
G243991 NA other downstream 2104664 2635237 ~ 2652560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G191933 tmbim6,LOC106583271 non-coding NC_035918.1 CM008321.1 22186834 ~ 22205690 (+)