RNA id: CI01000057_00346063_00377661.mRNA


Basic Information

Item Value
RNA id CI01000057_00346063_00377661.mRNA
length 2931
RNA type mRNA
GC content 0.49
exon number 9
gene id CI01000057_00346063_00377661
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 345320 ~ 378400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATATACATATGGGCCCATGGATAGATAGGACAGATCGCCAATATCCTGGCACCTCTAGTATGGTTGTCATTTGGCTTAAGTGCTTTTGTGGGTCTTTTAAAATTGTGCATCTTTGAAATCCTATTATAATAATCCACACCTACAGTATTAAGAAATAAAAAGTGCTGGAGTTTGTTGAGGGGGCGATGTTGCCAAAGTCCTGCACTCCCTCCTGTGTGCACGAATGCGCGTCTCCGCGTCCTGGGGTGGCGTGCGCGCGCGCGGCACTTGTGGGGGCGGAGAGTTCGCTGCGGATCTCCCTCTTTTAGGAGTATGAAACTCGATCCCGGATCATCCCGTCGCGCCGGTAGGGTCCCATATAAAACAGTCGTGCGATTACGGAGTTAGACGAAAGAGACCGTGAGAATAATATCAGTGTGATCGGAGAGTTTGGAGTTCATTCTTGCGCTATTCTCACTGAGATGAGTCGCAGATCTCCAGATGTCCCGGAGTTTCAGAAATGAACTGACATACAGACGGTGTGCTCCGTTATTCCTGCACGTTTCCATGGAGAACATGATGCGTCCTGGAAGGATAGACAGATAGTGACTGCATTGCTTGTTTCTGCTCAATCGATGATACTTGAGGGTTTTTTTAACGCATGAGAAGAAGACTGCATGGACACCAGCTTCAGAGAGAATCTGAATGATTTGTATTGAAGTAAAGCTCACTGATAGGCCTGTATATTCTTAATGAAAGCATGAGCTCGCTGTTGTTTGGAGAGGGTTTTTTGGGCGGCGCGGTGAGCGCTGCGCCATCAGACGCGGTGCCCAGAGCGCTGCGCAACGACCTGGGATCCAACATCCATGTCCTTAAGACCCTCAACCTGAGGTTCCGCTGCTTCCTCGCCAAAGTCCATGAGCTGGAGAGAAGGAACAAACTTCTGGAGAGCCAGCTTAAGCAAGCCTCCAGTCAGCCGAGGTATCCGGGCTTCTCCTTCACGCGTGAAGTGGCCGTCCAGACTGACTCTCTGGAATCCAGACTTCCAGGCACCATCTGGAGTTTTACGCATATTTTGAGACACGGGGAGCGCGTAAAGACTGTCCAGGGGCCCGGAGTCACCTGGACCCATCCGGACGGGGTTGGGGTCCAAATCGACACCATCACCCCAGAACTAAGAGCTTTGTATAACGTTCTGGCCAAAGTCAAACGGGAGAGGGATGAGTACAAGAGAAAGTGGGAGGAGGAGCTGTCGAGAAGAGAACAGATGGAATCGATGGTGCAGACGCTACAGGAGAACGTAAATGAGTCCGAAGCCATCCAGGACGAGTTGAACGAGAAGGTTGAAAGACTGAAAGCTGAACTAGTGGTCTTTAAGAGCCTCATGAGCGATCAAATGTCCGACCTCGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGACATGGACATCTGCAGGAGAATCGACATCACAGCCAAACTGTGTGACGTGGCTCAGCAGAGGAACTCAGAGGACATGTCAAAAATGTTCAGCCCTTCCAGAGCACCAGCAGACAGGGCAGCTGTTGCATGCAGAAAGAAGGAGAAGAAGCCGTTATCGGATGAGGAAAGCTCCGAGATGGATGCTGATCCTAGCACTTCAGAGGAAGACGTTCCCTTCAACATCACAGACGAGATGAAACGCATGCTCAACCATCTACATTGTTCAGATAACTCATTTGTTGCTAGGCGGGAGACGTTTGAGATCGATGATGACTGTGACAGTCTGACGTGGGAAGAGAACGACGATACGCTGCTGCTATGGGAAGATTTCACCAACTACAATGTACCCTGCGCCCTTACCAACAGCACCGGCGCTCTCGACTGCAACGGAGACGCTCATGAAGCGGACGGCAGTCTTGGTAGTCTCATCGATGAGACAGAGTCTCTTATCAAGACCAGAGAGCAGGAATATCAGAAGACTATTGGACAAATTGAGATGGAGTTGGCCACAGCTAAGAGTGACATGAACAGACACCTGCATGAGTACATGGAGATGTGCAGCATGAAGCGAGGGCTGGACGTGCAGATGGAGACATGCAGGAGAATGATCAAGGGTGGAAGAAATTCTCCTTCCATCAGCTCATCCGCAAGCAGTGACTCAGGGAACACTGACGAGATACAAGACGAGTCAGACAAGGATGGAGAGACGGAGGGGCCAATCAGCTGATACCTGCCCAGCCTGGCCCCGCCCTCTTCCCCCCACCAAGCTCCAATCAGCTCTCGGGCCACCCAGTAATCGTCCAATGGTGTTATACTAAGGGACAGAGCCCACCCCACAAACCCAAAATCCTGTAGGTGCTTTAACGTCTCCGTGTCAGAGTGGGGCGGAGTTGATGAGGGTTGTTTTTGTGCTTCGACATCAATATTGATGCGTCACACGGTGCCACAGCTCTGCTGGACAACTATGAATCGGATCAGTCCCAGCCAAAATACATCACACAATACACCTGATCAAACCCAAATCCATATCTTGATTAGAAACTGGAAAACGTTCACGCAACGTGAATGATAAATAAGACTGAAAGCCAATCAGACCAAAACTGAAAACACTCCCTTAACATTTGTGGCTTTTTATTTTTCTAAAAAACGATTTCAGAAATCAACGGTTTACTGCAGAAACATTTCGGCCTTTTAAGCCCCGAACCCAGTCACGAATGTGGAACACAGAACAAGCTCACGTTCTATGCAATCAGCCTTACTTCGTGATCTGTGTTTATGATTTGCCTTAGTTTGCAGTGCAGGCGATTTCATCTGTTCATGTGTTTTAAAGTGTTGCCCAGGCCTTGGTGGCTCACAATGTTTACGCACTTAATGCCAGAATCTGTGGAACAGTGTCCCATCATTTTGAGCAGCTGCCAATGATGATTGAAGCTATTCCAAGGGTTACACGTTTAATATCTCAAATA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276242 lncRNA upstream 144642 194141 ~ 200678 (+) True G243411
TU276256 lncRNA upstream 151604 191457 ~ 193716 (+) True G243425
TU276253 lncRNA upstream 183212 94117 ~ 162108 (+) True G243422
TU276246 lncRNA downstream 21791 400191 ~ 404669 (+) True G243415
TU276326 lncRNA downstream 42436 420836 ~ 420958 (+) True G243477
TU276328 lncRNA downstream 42436 420836 ~ 421940 (+) False G243477
TU276332 lncRNA downstream 42436 420836 ~ 420958 (+) False G243477
TU276333 lncRNA downstream 42436 420836 ~ 420958 (+) True G243477
CI01000057_00335633_00339359.mRNA mRNA upstream 5823 334007 ~ 339497 (+) True CI01000057_00335633_00339359
CI01000057_00220530_00241371.mRNA mRNA upstream 102776 219465 ~ 242544 (+) True CI01000057_00220530_00241371
CI01000057_00187004_00188981.mRNA mRNA upstream 156277 186824 ~ 189043 (+) False CI01000057_00187004_00188981
CI01000057_00132905_00133478.mRNA mRNA upstream 211677 132905 ~ 133643 (+) True CI01000057_00132905_00133478
CI01000057_00047033_00083978.mRNA mRNA upstream 261342 47033 ~ 83978 (+) True CI01000057_00047033_00083978
CI01000057_00388747_00398161.mRNA mRNA downstream 9906 388306 ~ 398819 (+) True CI01000057_00388747_00398161
CI01000057_00407250_00407817.mRNA mRNA downstream 28770 407170 ~ 408216 (+) True CI01000057_00407250_00407817
CI01000057_00413724_00414032.mRNA mRNA downstream 35214 413614 ~ 414289 (+) True CI01000057_00413724_00414032
CI01000057_00415376_00415786.mRNA mRNA downstream 36976 415376 ~ 415938 (+) True CI01000057_00415376_00415786
CI01000057_00417827_00418207.mRNA mRNA downstream 39300 417700 ~ 418655 (+) False CI01000057_00417827_00418207
TU276323 other downstream 39339 420156 ~ 420510 (+) True G243476
TU276324 other downstream 39339 417739 ~ 418631 (+) True CI01000057_00417827_00418207
TU276419 other downstream 576443 954843 ~ 955195 (+) True G243557
TU276421 other downstream 577663 956063 ~ 958371 (+) True G243558
TU276844 other downstream 2016198 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007153 True 1963 mRNA 0.53 9 NC_007122.7 41858807 ~ 41929506 (+)
bowfin (Amia calva) AMCG00002175 True 945 mRNA 0.58 8 CM030136.1 6200862 ~ 6207882 (+)