RNA id: CI01000057_00422727_00428274.mRNA



Basic Information


Item Value
RNA id CI01000057_00422727_00428274.mRNA
length 767
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000057_00422727_00428274
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 422438 ~ 428281 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAGGACAGAAATGTAGGCTATTTAAGTCACGTTGCAAGTGTATCAGATTCCTACCTGTAATTGATTCATATTGCCTGTGTTAGGGAACCAACTAACAGCCAGTTTGATCAGTTTAAGACAGTGAACATTTGGAGACGTGTGTCTGCTGTGGGTTTCAGTAGGACACACGTCTATTGTAGTGTAATTGAATTGAGTGAATGAAGAGAGCGTGAGAAACAGAACTCACTCAAAGACCCTCAGAAACAATAGAACTCAACTAAGAGACCAGAGGTCAGAGGTCAGCATGAATAGATTGGACTATAAATTTATCTTATTTCAACTTCAGATACTGATAATGCCCCAGTGCAAATCAGACTCGCTCTGCACAGAGAGATCTACAGCACAGAGATCCAGACATGACACCTCCAATCATCTCAAAGGAGCATCTCCCTCTCAAAAACAAGCTGAGAAAGCCAATAGTGGAGAAGATGAAGGTCTCAATAGCAGCATCGAGCAGCTCAAGTGTCTTCTGGCTCCAGAGTTCCTCAAGCAGCAGCAGCCTGATTCCAAGCTGGAGAAAGCAGATATCCTGGAGATGATGACGCTCGACTTCCAGTTCACATGCTGTCAATCAAGGCTTCTCCAGAGTCCCAAAATATTGAGTTTTATTGAGGGTTTTGGGATGCTAATGACACTGAGCTGTGATTCTGGGTACCAGAGCTTTCCCACACTGAACAATAGACATGTGCCTATTCAGATGCTAATGACCGCTTGATCCTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU276328 lncRNA upstream 498 420836 ~ 421940 (+) False G243477
TU276246 lncRNA upstream 17769 400191 ~ 404669 (+) True G243415
TU276242 lncRNA upstream 221760 194141 ~ 200678 (+) True G243411
TU276256 lncRNA upstream 228722 191457 ~ 193716 (+) True G243425
TU276253 lncRNA upstream 260330 94117 ~ 162108 (+) True G243422
TU276329 lncRNA downstream 24124 458421 ~ 459865 (+) True CI01000057_00457954_00458159
TU276349 lncRNA downstream 55898 484179 ~ 484463 (+) False CI01000057_00485167_00494040
TU276350 lncRNA downstream 56187 484468 ~ 484753 (+) True CI01000057_00485167_00494040
TU276265 lncRNA downstream 68463 496744 ~ 497326 (+) True G243434
TU276365 lncRNA downstream 134531 562812 ~ 563039 (+) True G243509
CI01000057_00417827_00418207.mRNA mRNA upstream 3783 417700 ~ 418655 (+) False CI01000057_00417827_00418207
CI01000057_00415376_00415786.mRNA mRNA upstream 6500 415376 ~ 415938 (+) True CI01000057_00415376_00415786
CI01000057_00413724_00414032.mRNA mRNA upstream 8149 413614 ~ 414289 (+) True CI01000057_00413724_00414032
CI01000057_00407250_00407817.mRNA mRNA upstream 14222 407170 ~ 408216 (+) True CI01000057_00407250_00407817
CI01000057_00388747_00398161.mRNA mRNA upstream 23619 388306 ~ 398819 (+) True CI01000057_00388747_00398161
CI01000057_00435808_00442819.mRNA mRNA downstream 7015 435296 ~ 442838 (+) True CI01000057_00435808_00442819
CI01000057_00452440_00452721.mRNA mRNA downstream 24082 452363 ~ 453165 (+) False CI01000057_00452440_00452721
CI01000057_00457954_00458159.mRNA mRNA downstream 29673 457954 ~ 458814 (+) False CI01000057_00457954_00458159
CI01000057_00485167_00494040.mRNA mRNA downstream 55886 484167 ~ 494565 (+) False CI01000057_00485167_00494040
CI01000057_00501025_00517941.mRNA mRNA downstream 72587 500868 ~ 517991 (+) True CI01000057_00501025_00517941
TU276323 other upstream 1928 420156 ~ 420510 (+) True G243476
TU276419 other downstream 526562 954843 ~ 955195 (+) True G243557
TU276421 other downstream 527782 956063 ~ 958371 (+) True G243558
TU276844 other downstream 1966317 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276911 other downstream 2148172 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 2148189 2576470 ~ 2576852 (+) True G243975

Expression Profile