RNA id: TCONS_00007289


Basic Information

Item Value
RNA id TCONS_00007289
length 739
RNA type mRNA
GC content 0.58
exon number 4
gene id XLOC_003783
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 260763 ~ 270210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACCTCACTGAACCGTCAGCTATGGACGCCATCATTCGCTGCCCATTCCTGTCCCGCGTCCCGCAGACGTTCCTCCAGCAAGCCAGGAAGTCTCTGGTGGCGTATGCGGTGAAGTGTCCTGTGATGATGGATCTGGCCTCCAGACCCCTGCTGCGCCCGCTCTGCTCCTCTAGCGCCAGCTTCCAGAAGGTGGAAGACTCCTCTGCGGCCGGACATGCCAGTGATGCTCCTGCAGTGCCCGCTGGTCACCCTGCTCCTGCAGCCGGGCATGCCTCCGCCTCTAAATGCCCGTTTCTGGCAGCAGAGATGAGCCAGAAGAACAGCGGTGTGGTCCGGCAGGCCAGCATGGCTCTCCAGGAGGATGTTTCTGAAGTTCGCACCGTGCAGAAAGACGTCTCTGCATCGGCGCTCACTCCTCTGAAGGACGGCATGAATGGAGGAAACCTGATGAAGAAGCTGATGAAGCAGCGTCCCGCTCACGTCTCTCACCTGCTGCAGGACAACATGCCCAAAAATGTGTCCAGCTTTCGTTATGATGAGTTCTTTGAGAAGAAGATCGAGGAGAAGAAGAGCGATCATACGTACCGCGTCTTTAAAACGGTGAACCGCAGAGCCACAGAGTTCCCCATGGCGGACGACTACACCGAGTCTTTATCCTTCAAGAGGAACGTGTCTGTGTGGTGCAGTAATGACTATCTGGGCATGAGCCGCCACCCGCGCGTCGTCCAGACCATCATG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0048821 erythrocyte development biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001229-2 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within neutrophil differentiation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including EVL; digestive system; periderm; polster; and pronephros. Orthologous to human ALAS1 (5'-aminolevulinate synthase 1).

Ensembl:

ensembl_id ENSDART00000172779

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008439 lncRNA downstream 70644 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 74898 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 77519 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 82034 178319 ~ 183325 (-) True XLOC_003779
TCONS_00008437 lncRNA downstream 97908 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008725 lncRNA upstream 98917 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007306 lncRNA upstream 213045 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 275251 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 296013 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 329230 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007287 mRNA downstream 28593 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007285 mRNA downstream 82031 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007284 mRNA downstream 100041 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007283 mRNA downstream 100071 161196 ~ 165288 (-) False XLOC_003778
TCONS_00007282 mRNA downstream 123767 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007290 mRNA upstream 5847 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007291 mRNA upstream 5848 276058 ~ 277599 (-) True XLOC_003784
TCONS_00007292 mRNA upstream 11623 281833 ~ 287670 (-) True XLOC_003785
TCONS_00007293 mRNA upstream 35797 306007 ~ 306533 (-) False XLOC_003786
TCONS_00007294 mRNA upstream 35797 306007 ~ 308838 (-) False XLOC_003786
TCONS_00007296 other upstream 78903 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 189605 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 653585 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 799196 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3683513 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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