RNA id: TCONS_00007314


Basic Information

Item Value
RNA id TCONS_00007314
length 1028
lncRNA type retained_intron
GC content 0.51
exon number 3
gene id XLOC_003796
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 543362 ~ 575786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACTGCCTGAACTGCATCCGCCAGTGGCGCTGCGTAGAGCAGTTACACAACCAGATACGCAAgtcttGTCCAGAGTGTCGTGTGGTCTCAGAGTTCGTGATTCCCAGCATCTACTGGGTGGAGGATCAGGAGCAGAAAAACCTGCTCATCGAGGAGTTCAAGTCTGGAGTCAGGTGTGTGTGTCACACTTATTCtcagaacacagtaaacacagtgagtgtatttccacacacacacacacacacacacacacactctatactCTGCTGTTTTACTGGTATATCAGACAGAGTCTCCAGCACAGGCTGATGTGAAGGGTTAACACTACACACTGATGCTCAGCAGTAAATGACGGAGCGCTCCTCTTACTCCTCATCTTGTGTCAGATATTGACTGATTCAGCACTTTCACACCTCACACATCCCCTCAGCAATGCAGAGCCTCATATCTGTGTGACATTAGCagaatgatgtgtgtgtgtgtgtgtgtgtgtttctccagtaAGAAAGCCTGTAAGTACTTTGACCAGGGCAGAGGAACGTGTCCGTTTGGAGGGAAGTGTTTCTACATGCACGCTTATGCTGACGGCAGACGAGCAGAACCTGACAAACCCCGAAAACAGCTCAGCGCTGAGGGAAACGTGcggttCCAGAACTCGGTGCGTCTGTGGGACTTCATCGAGGAGCGCGAGCACCGGAGTGTCCCGCAGCTGGAGGACGAGGTCAATGACCTGGGGGAACTCTTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCGCatagatgaacacacacacacacacacacacacactcagactctTCATGCAGCTGTCAGGAGCCTCAGACGCACCGCATTGatgaacacacactgaacacacacactcttcatgCAGCTGTCAGGAGCTGCAGACGCGCCTCatagatgaacacacacacacacactacacacacacacacacacac

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-020213-2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within cell differentiation and nervous system development. Is expressed in several structures, including eye; gill; gonad; integument; and liver. Orthologous to human MKRN2 (makorin ring finger protein 2).

Ensembl:

ensembl_id ENSDART00000173120

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007311 lncRNA downstream 17825 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007306 lncRNA downstream 79895 483255 ~ 486328 (-) True XLOC_003794
TCONS_00008725 lncRNA downstream 196537 369127 ~ 369686 (-) True XLOC_003788
TCONS_00008439 lncRNA downstream 371508 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 375762 183570 ~ 190461 (-) False XLOC_003780
TCONS_00007316 lncRNA upstream 29019 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007317 lncRNA upstream 29337 599758 ~ 601308 (-) True XLOC_003799
TCONS_00008726 lncRNA upstream 245504 815925 ~ 823447 (-) False XLOC_003802
TCONS_00008727 lncRNA upstream 245504 815925 ~ 843826 (-) False XLOC_003802
TCONS_00008728 lncRNA upstream 361072 931493 ~ 985740 (-) True XLOC_003804
TCONS_00007309 mRNA downstream 22036 543362 ~ 544187 (-) False XLOC_003796
TCONS_00007307 mRNA downstream 68369 491587 ~ 497854 (-) False XLOC_003795
TCONS_00007308 mRNA downstream 68543 492481 ~ 497680 (-) True XLOC_003795
TCONS_00007305 mRNA downstream 79691 474433 ~ 486532 (-) False XLOC_003794
TCONS_00007303 mRNA downstream 93676 457423 ~ 472547 (-) True XLOC_003792
TCONS_00007315 mRNA upstream 17596 588017 ~ 596505 (-) True XLOC_003798
TCONS_00007318 mRNA upstream 39095 609516 ~ 669270 (-) False XLOC_003800
TCONS_00007319 mRNA upstream 67791 638212 ~ 669558 (-) True XLOC_003800
TCONS_00007320 mRNA upstream 104875 675296 ~ 762721 (-) True XLOC_003801
TCONS_00007321 mRNA upstream 245685 816106 ~ 843811 (-) False XLOC_003802
TCONS_00007304 other downstream 106293 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 214522 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007326 other upstream 353374 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 498985 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3383302 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5501539 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 5626855 6197276 ~ 6206589 (-) False XLOC_003884

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU23710 True 480 TUCP 0.53 2 CM030122.1 50551880 ~ 50552985 (+)