RNA id: TCONS_00007291


Basic Information

Item Value
RNA id TCONS_00007291
length 822
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003784
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 276057 ~ 279328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagcagCAGATGAATGGTCTTCTGGAGGATCGTCTGCTGGTGGAGATGCTGCGCTCCTTACTGCACGGCTCTCAGAGATACGAGCGCAACCCTTCAGTGCTGCACCAGCCTCAGCGGTTTGGTCGTGGAGCGCGCAGTGGTTTGTCCACAGAGGAGCGAATACAGTCCCGGGACTGGGAGACGGTGCCCGGACAGATCTGGAGCATGGCTGTACCGCAGAGATTCGGCAAAAAATAACGCAAACCCGACAGAGAAACGTCAGAGATGTCTGTGGAGTGATGCATACACACAATTACTGCATCCAGAATCATATCTGTGAGCGTGTCATTAAAGCATTTATATTGGTAAAGATGTGATTATTAATCCCCCTGTGAAATGAACAGAGTTTTAAATGTCTCCCAGTCACAGCAACATATCTAATGCTGTTtaccattttttcttctggataaattATTTCACttagtttgactggaataaaagcCTGTTTCTGTTTGCCTACTGAGAAAATCAACGATGTCAGTCGACTTGCCTAGTTCAGCCTGCACATTAAGCTGAACAccagtgtcttgaagaatatctagtctaatattatgggctgtcatcatggtgaagaggaaacacatcagttattagacatgagttattaacactgttatgattaggaATATTTAAGCAGCAttcctccattaaacagcactcgGGGAATATTTCAAAACAATCACAGTTTCACAGGAGAGCGAGAGACTCTTCATCTGCATCTCAGCGTAATCACTCAGCATGTTGCATCTCATCTGTGATCGTCAATAAACCCATACAACAGTG

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030806-1 Predicted to enable neuropeptide hormone activity. Predicted to act upstream of or within neuropeptide signaling pathway. Orthologous to human NPFF (neuropeptide FF-amide peptide precursor).

Ensembl:

ensembl_id ENSDART00000187109

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008439 lncRNA downstream 81343 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 85597 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 88218 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 92733 178319 ~ 183325 (-) True XLOC_003779
TCONS_00008437 lncRNA downstream 108607 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008725 lncRNA upstream 91528 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007306 lncRNA upstream 205656 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 267862 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 288624 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 321841 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007288 mRNA downstream 5848 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007289 mRNA downstream 5848 265359 ~ 270210 (-) True XLOC_003783
TCONS_00007287 mRNA downstream 39292 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007285 mRNA downstream 92730 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007284 mRNA downstream 110740 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007292 mRNA upstream 4234 281833 ~ 287670 (-) True XLOC_003785
TCONS_00007293 mRNA upstream 28408 306007 ~ 306533 (-) False XLOC_003786
TCONS_00007294 mRNA upstream 28408 306007 ~ 308838 (-) False XLOC_003786
TCONS_00007295 mRNA upstream 29733 307332 ~ 309420 (-) True XLOC_003786
TCONS_00007297 mRNA upstream 116894 394493 ~ 396724 (-) True XLOC_003789
TCONS_00007296 other upstream 71514 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 182216 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 646196 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 791807 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3676124 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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