RNA id: TCONS_00007295


Basic Information

Item Value
RNA id TCONS_00007295
length 496
RNA type mRNA
GC content 0.55
exon number 3
gene id XLOC_003786
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 306007 ~ 309420 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTCTGCGCACGCGCCAAACACGGCGGGTAAATTGAACGCTGTTGCTAACCAACCGCCAGCCCGCGGTGAGCGATTATCTCCGGGTTAACAGCCCTGAAGCCGGCTTTATCCTCTTTATTTGTGCACATCTTCGTCCGCGTGTCTCCCGTGGGTTACTGGAGAATCTCACCGTCTGGAGGACCGCAGCTCTCACAGCAGAGCGGATGTAAACAAACAGAAGATCCGGTTTCATTCATTCACCAACGCTGCAGTTCTTCATCATCAGAGAATAACATGAGCTCtgcgctggatgaTCCGACACTCGAGCGCAACTTTAAGGGCCACAGAGATGCGATCACCAGCCTGGACTTCAGCCCCCAGCGGCAAACAGATCGCCTCGGGCTCGGTGGATGCCTGTGTGATGGTCTGGAACATGAAGCCTCAGTCGAGGGCCTACAGGTTTACTGGACACAAGGATGCGGTGACGTGTGTGCAGTTTTCTCCGTCTGCTCATC

Function

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1993 Predicted to act upstream of or within cell projection organization. Orthologous to human POC1A (POC1 centriolar protein A).

Ensembl:

ensembl_id ENSDART00000173185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008439 lncRNA downstream 112617 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 116871 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 119492 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 124007 178319 ~ 183325 (-) True XLOC_003779
TCONS_00008437 lncRNA downstream 139881 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008725 lncRNA upstream 59707 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007306 lncRNA upstream 173835 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 236041 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 256803 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 290020 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007293 mRNA downstream 799 306007 ~ 306533 (-) False XLOC_003786
TCONS_00007292 mRNA downstream 19662 281833 ~ 287670 (-) True XLOC_003785
TCONS_00007290 mRNA downstream 28004 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007291 mRNA downstream 29733 276058 ~ 277599 (-) True XLOC_003784
TCONS_00007288 mRNA downstream 37122 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007297 mRNA upstream 85073 394493 ~ 396724 (-) True XLOC_003789
TCONS_00007298 mRNA upstream 101450 410870 ~ 426525 (-) False XLOC_003790
TCONS_00007299 mRNA upstream 101759 411179 ~ 422484 (-) True XLOC_003790
TCONS_00007300 mRNA upstream 120356 429776 ~ 438294 (-) False XLOC_003791
TCONS_00007301 mRNA upstream 121598 431018 ~ 438518 (-) False XLOC_003791
TCONS_00007296 other upstream 39693 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 150395 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 614375 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 759986 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3644303 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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