RNA id: TCONS_00007300


Basic Information

Item Value
RNA id TCONS_00007300
length 1567
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_003791
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 429776 ~ 438518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttgttgttatgaggGCGGTCTGTGTTGTGCCAGTAAACAGTGAAGTGTCGCTCAGTACTTCATTACAGTCATTTGTTTCTCTTGAGCAGCAGACATGTCTGAAAACACGTTCCCGGTGTACAAAGTGGATGTTATAGTGCAGTTTTACCGAACTGAGGTTTTGACTGGACAAGAGTCTAAACATTTCACCAAGAATGACCTCACTCCGACTCCTAAGCCAGAATCCGTTCAAAGGCTCTACATGAGAATTTTGCAGCTTCTCTTTCGTTTCAGACCTGAGTGCCATTACACGGTGCCGCTGTCTGAAAACATTCAGTACCCGATGCTGTACGAGTCGTTTGCTCCAATCATGAGCGTTTACATGCGCATGTGCCAGTTTTTACCGGTCTGCCGTGTGTATGATTTTTCACTGAGTGATCTGCTCAACCCCAAGACGAAGCGAACAATCACTATACTCAGCGCAATCCAGAATTTCCTGCACTTCAGAAAGCAGAGGTTGGAAATTACTGCAGCCCACCAGCAAAGTTTTCGAGCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAAGAGGCTGAGAAGAAGATTGAGAAGCTGACTACCATACCACCAGAGCAGCAAGCAGAAGCTAAAGAGCTGGCGTCCGCCCTGGCAGAGCTGAGCACTAACACACAGCATGAATACCAAGATGTGAGCGCAATTAATGAAAAGGTTGCACAGTTCAAGACGGAAATTGCGGAGCTGTCACAGAAACTGACTCAAAGGAAAGTAGAAGTGGCGACACTGAAGGATGAAATATCAAAGCTCAAGTCTCAGATCGTGGAGTCGCCTGAAGAGCTGAAAAATGAAATGGAAAGAATGAGAGAGACTGCGAAGAACATCAAGATGTCGAAAgagCTGGCGGATGAGCGGCTGGTGGAGCTGCAGATGCTGGTTCAGTGTGCCAGTCAGGTGGAGGCAGAAATCCAGATCCTGCTCAAACAGCTGCAGGACTTGCAGAGCAGCATGAGCAAGACCAAACAGCGAAAAGAGGAGGTTCAGAGTTTAGAAGTCATGAATGAAAGCTTGCAGAAAGAGCTGAAAAGCCTGAGCAGTGAAGAAGCCCAGCTGAAGAGGGCGCTCACCATGAAACTCGACAAGGAGTCCAAACAACAGATTCGTAGACAGAAGAAAAAAGAGGTGAAAGATCAGCAAGTCAAAAATATTTATGGACAATATGACAAAATGCACCAGAAACGGCaggaaattgtgaaaaaaattgaAGAATGCAACCGTGAAACAAAACAGTTTAAGGAAAAAATGCAGGCACTGAGAGAGAATTGCAATCAACGGACTCAAAAAGCCCAGGAAATTTATGAACGACTCCTCACAACATTGGAGCAGTATCACAAGCGGATCGAAAAGATTTTGGTGGAGACTAATGCTGACGCTCTGAAAATGAAGTCACATTTCTAGAGTGATTTGTTTGTACAATGGTTGTGTCATTTGtttcattgtgtttgtgtgttatgtATTGTCCCCTCTCCTTTACATTCAAAAGATGAATGAACAGTTGCATTTAC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0045132 meiotic chromosome segregation biological_process
GO:0007049 cell cycle biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051301 cell division biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0051383 kinetochore organization biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1121 Acts upstream of or within heart development. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and pancreatic cancer. Orthologous to human NUF2 (NUF2 component of NDC80 kinetochore complex).

Ensembl:

ensembl_id ENSDART00000040812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008725 lncRNA downstream 60090 369127 ~ 369686 (-) True XLOC_003788
TCONS_00008439 lncRNA downstream 235061 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 239315 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 241936 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 246451 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007306 lncRNA upstream 44961 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 107167 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 127929 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 161146 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007317 lncRNA upstream 161464 599758 ~ 601308 (-) True XLOC_003799
TCONS_00007298 mRNA downstream 3251 410870 ~ 426525 (-) False XLOC_003790
TCONS_00007299 mRNA downstream 7292 411179 ~ 422484 (-) True XLOC_003790
TCONS_00007297 mRNA downstream 33052 394493 ~ 396724 (-) True XLOC_003789
TCONS_00007295 mRNA downstream 120356 307332 ~ 309420 (-) True XLOC_003786
TCONS_00007294 mRNA downstream 120938 306007 ~ 308838 (-) False XLOC_003786
TCONS_00007303 mRNA upstream 19129 457423 ~ 472547 (-) True XLOC_003792
TCONS_00007305 mRNA upstream 36139 474433 ~ 486532 (-) False XLOC_003794
TCONS_00007307 mRNA upstream 53293 491587 ~ 497854 (-) False XLOC_003795
TCONS_00007308 mRNA upstream 54187 492481 ~ 497680 (-) True XLOC_003795
TCONS_00007309 mRNA upstream 105068 543362 ~ 544187 (-) False XLOC_003796
TCONS_00007296 other downstream 78075 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 21521 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 485501 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 631112 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3515429 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5633666 6071960 ~ 6072066 (-) True XLOC_003881

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04543887_04545600.mRNA True 1762 mRNA 0.37 4 CI01000057 4542871 ~ 4546001 (-)