RNA id: TCONS_00007297


Basic Information

Item Value
RNA id TCONS_00007297
length 661
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_003789
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 394493 ~ 396724 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGAGGTGTGTGTGATGCTGTAGGTGCTCACTATAAAACCCGCAGAGAAAACCGAGGGAAAGCCACTGATATATCAGATATATCTGCAGCAGTCCAACAACACAGAGGTGCGTCCACAGGGGAAGGAGAAAACAAGCAGCAGAATGTTACCTTTGACTGAAGCTGGATCTCTCTGCACAGCCTGGATTTTACACTGACCGTCTGTTTCTCTGAGATTATCTGGAATAACTGTGATGGCCAGGGTGTCATTCATACATCTGGGAGTTTTGCTTTTTATTGGACTAACAGTCGCGATGGCCAACGGATTTTCCTCGTTTCGTCCTGAAGCGCTCGTGAAAAGCAGCAGTAAGGATTTCCCCGGAGCCCCAAGCACAAGCGCAGCCCCTCCACATCAGTTTGAGGGTAAAAGCGGAGCCTGTTTGCTCTGCCAGCTCCTGAAACCCCACAGGAGAGACAAGAGATGCACGTGTTACTCCTATAAAGACAAGGAGTGCGTTTACTACTGTCACCTGGACATCATCTGGGTCAACACACCTGAGTAAGTTCATGAGCTGCACAGCAGATAATGACCAACATGTGCTGGAACCTGACACGGGCTTTACTGACTGAGAGGAGCTCTAGACAAGGCAGGGTTACTTCTgttttatacagtgctcagca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184375

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008725 lncRNA downstream 24807 369127 ~ 369686 (-) True XLOC_003788
TCONS_00008439 lncRNA downstream 199778 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 204032 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 206653 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 211168 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007306 lncRNA upstream 86531 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 148737 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 169499 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 202716 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007317 lncRNA upstream 203034 599758 ~ 601308 (-) True XLOC_003799
TCONS_00007295 mRNA downstream 85073 307332 ~ 309420 (-) True XLOC_003786
TCONS_00007294 mRNA downstream 85655 306007 ~ 308838 (-) False XLOC_003786
TCONS_00007293 mRNA downstream 87960 306007 ~ 306533 (-) False XLOC_003786
TCONS_00007292 mRNA downstream 106823 281833 ~ 287670 (-) True XLOC_003785
TCONS_00007290 mRNA downstream 115165 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007298 mRNA upstream 14146 410870 ~ 426525 (-) False XLOC_003790
TCONS_00007299 mRNA upstream 14455 411179 ~ 422484 (-) True XLOC_003790
TCONS_00007300 mRNA upstream 33052 429776 ~ 438294 (-) False XLOC_003791
TCONS_00007301 mRNA upstream 34294 431018 ~ 438518 (-) False XLOC_003791
TCONS_00007302 mRNA upstream 34364 431088 ~ 438492 (-) True XLOC_003791
TCONS_00007296 other downstream 42792 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 63091 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 527071 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 672682 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3556999 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5675236 6071960 ~ 6072066 (-) True XLOC_003881

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05955545_05960873.mRNA True 658 mRNA 0.46 3 CI01000057 5955538 ~ 5961098 (-)